| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1300 |
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| Symbol | |
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| ID | 6462343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1358879 |
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| End bp | 1361194 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642727541 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_002018182 |
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| Protein GI | 194336388 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATCCG TTTATAGAAT ACTTTTTCTC TTTGTTGCTC TCGCCTGTGC GGGGATTCAG
GGCAGAGAGA CTCTTCGGGC AGCAGTCAAC AGGGATGTTG ATGAACTTTA CCGGGTCAAG
CGTATCAAAA TCATCGCAGA GAAAGATCTG GAGAATGCAG AGAAAAACAG CGAAGTGAAT
TCTGCCGATC TGGCACTGAA CCTGAACAAT ATTGCCGGCT TGTACTATGC TCAAGGGCTC
TATGCCGAAG CTGAACCACT TTTCAGGCGT GCGCTCGCCA TCCGTGAAAA AATCCTCGAC
AGCAACCATC CTGATCTGGC AACCAGCCTG AACAATATCG CTGAGTTGTA TAAGGTTCAG
GGACGATACA CCGAGGCCGA ACCGCTCTTC AAGCGGGCGC TGGCCATCAG GGGAAAAATC
TTTGGAGACA ATCACCTTGA TGTTGCCGTA AGCCTGAACA ACCTGGCTGA GTATTATGGT
ACTCTCGACA AATATAGCGT GGCAACATCG CTCTCTCTCC GCTCACTTGC CATCCGTGAG
AGACTCCTTG GCAAAGATCA TCCTGATGTA GCCATGAGTC TGAACAACCT CGGAAGATTA
TACTTTGCCC AGGGTCGGTA TGCAGAATCG GAGCAGCTCT TTAAACGTGC ACTCCAGATT
GATGAACGTC TGCTCGGCCA GAATCACCCT GATGTCGTCA GGCCTCTGAA CAACCTGGGT
GAACTCTATC AAATTCAGGG GAAATTCAGT GAAGCCGAGC CGCTGTATCT CCGGGCACTG
GCCATCCGAG AAAAAAACCT TGACCCGTTT GATCCTCATC TGGCAACAAG TATCAACAAT
CTGGCAGGAC TCTACTTTGT CGAGGGGCGC TATGCAGAAG CCGAATCGCT CTACCTGCAG
GCACTCGCCA TTCGGGAGAA GGCTCTTTAT CCGGATGACC CCGATATTGC AACAAGTCTT
AATAACCTTG GAGAGCTGTA TAAAATGCAG GGGCGGTACA AAGAGGCTGA GCCACTCTTC
AAACGTTCGT TGGCGATCCG GGAGAAGGTT TTTGGCCCTT TTCATTCCAA GGTATCCATC
AGCCTGAACA GTCTTGCCGG GCTGTACTCG GCAGAGGGGA GATATGCAGA AATTGAAGCG
CTCTCCAAAC GGGCGCTCGC CATCCGGGAG AAGGTTTTTG GATCCGATCA GCCCGATATC
GCTACATGCC TGAACAATCT GGCTGGATTT TACGCACTCC AGGCCAGATA TCAGGAGGCC
GAACCGCTCT ACCTGCGGGC GCTCACTATC CATGAGAAAA CATTCGGCAA GGAGCACCCC
CGTGTAGCCC AGATTCTGAA CAACCTGGCT GAGCTCTACA AAACCCAGGG GAGATACCAG
GAAGCAGAGC CCCTCTACCT GCGTGCACTT GAAATCAGGG AGAAGAGCTT TGGCCTTGAG
CACCCCGATG TTGCCAGGAG CCTGAACAAC CTGGCCACAC TGTACAGGGT TCAGGAAAAA
TACGCCACAG CACTGCCACT GATGAAACGG GCGCTGGCCA TGCAGGAAAA AATCCTCGGC
CCCGACCATC CTGATGTAGC AGTGAAGCTG AATAACCTGG CCTCCCTTTA TTATGCCCAG
GCTCAATATA CACTGGCCGA ACCGCTCTTT ATACGAGCAC AGCTCATCTT TGAAAAAGCC
CTTGGTTCTG ATTCTCCCGA TCTTGCCTTC AGCATCAACA ACATTGCTGC GCTCTATTAT
GCCCAGGGTC GGTACAAAGA GGTTGAACCG CTTTACAAGC GTACGCTTGC GATTTTTGAA
CACGCCTTTG TCTCCGATTC ACCTGATGTT GCCCTGAGTC TTGATAATCT GGCGCAACTG
TTTCTTACCG AGAAAAAGTA CAGCGAAGCT GAGCCACTTT TCAGGCGAGC GCTCGCCATC
CGGGAAAAAC TGTTTGGCTC CCTTCACCCT GATGTGGCAT TAAGCCTTAA TAACCTGGCC
TTACTCTACA ATGATCAGGG TAAATACCAT GAAGCAACAC CTCTTCTGAA CCGTTCGCTT
GCAATCTGGG AGAAAACGTT TGGCCCCTAT CACACCAATG TAGCCGTGAG TTTGAATAAC
CTGGCGGTGA TTTATGTAGC CCAGGGGCAG TATAAAGAGG CCGAACCGTT ATCGTTGCGT
TCACTGGCAA TCATCGAAAA AAATCTTGGA CTGATTCACC CAAATGTTGC AACACTCCTT
GAAAATTTAG CGGTCATCTA TTCGCATACC GGGCGCAAAA GCGATGCTGA TGCAACGGAA
AAACGGGCCA TCGACATCCG CTCGATTAAA CGATAA
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| Protein sequence | MRSVYRILFL FVALACAGIQ GRETLRAAVN RDVDELYRVK RIKIIAEKDL ENAEKNSEVN
SADLALNLNN IAGLYYAQGL YAEAEPLFRR ALAIREKILD SNHPDLATSL NNIAELYKVQ
GRYTEAEPLF KRALAIRGKI FGDNHLDVAV SLNNLAEYYG TLDKYSVATS LSLRSLAIRE
RLLGKDHPDV AMSLNNLGRL YFAQGRYAES EQLFKRALQI DERLLGQNHP DVVRPLNNLG
ELYQIQGKFS EAEPLYLRAL AIREKNLDPF DPHLATSINN LAGLYFVEGR YAEAESLYLQ
ALAIREKALY PDDPDIATSL NNLGELYKMQ GRYKEAEPLF KRSLAIREKV FGPFHSKVSI
SLNSLAGLYS AEGRYAEIEA LSKRALAIRE KVFGSDQPDI ATCLNNLAGF YALQARYQEA
EPLYLRALTI HEKTFGKEHP RVAQILNNLA ELYKTQGRYQ EAEPLYLRAL EIREKSFGLE
HPDVARSLNN LATLYRVQEK YATALPLMKR ALAMQEKILG PDHPDVAVKL NNLASLYYAQ
AQYTLAEPLF IRAQLIFEKA LGSDSPDLAF SINNIAALYY AQGRYKEVEP LYKRTLAIFE
HAFVSDSPDV ALSLDNLAQL FLTEKKYSEA EPLFRRALAI REKLFGSLHP DVALSLNNLA
LLYNDQGKYH EATPLLNRSL AIWEKTFGPY HTNVAVSLNN LAVIYVAQGQ YKEAEPLSLR
SLAIIEKNLG LIHPNVATLL ENLAVIYSHT GRKSDADATE KRAIDIRSIK R
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