| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1285 |
|---|
| Symbol | |
|---|
| ID | 6463698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1344997 |
|---|
| End bp | 1347801 |
|---|
| Gene Length | 2805 bp |
|---|
| Protein Length | 934 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642727526 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002018167 |
|---|
| Protein GI | 194336373 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCGTCAT TGCATAATTA TTTCAGAGTT TTACGAAGTT CACTTCTCTT TTTTTTCTGG
ATATGCCTTG CGACCGGCCA CCAGACGGAA CTCTTGTATG GTGAAGAGAA GAGGACGGCA
GAGTCTCCGA CCGCCCTCAG TGAGGACGAT TTGCTGCTTT GCGTCGTTCG TCTTGGCGGA
GCGACGCTTT CCGGTAATCT GGTCACCTAT TCTGCCCCTC CTGGACTCTT TCTTCCTCTT
GGTGAGCTGA GCCGAAGCCT TGAACTCGGC ATTACTGTTG ATCCTGCAAA AGGAGTCGGA
TCAGGCCATG TTGCCCTGCC CTCTCAGTCT TTCATGCTCG ATATGGCAAA ATCCTCCATT
ATCGTAGACG GCAACACATA CCGGTACGAC CCGAAGCTGG TGGTAGCCCT CACTGACGAT
ATCTATGTCG AAAGCAGATT GCTTGCCGAA TGGTTTGCCA TGCGCATCGA TGCCAACCGC
CTTGATGCTG CAGTCGATAT TCGTCCGTTT GAACCGCTTC CTATTCAGCA ACGCATGGCG
CGCAGCCAGC GAGGCTCCAA TACATGGGGC TATGGCAGCT ACAATGATCC CGGCTATCCG
CTGTTGAACA CTCCATTCCG CCTCCTTGCC GGCCCGAGCA TTGACATCTC CCTCTCCTCC
TCACTGACCG GAGAGGGGAC AGCTAACATT ACTCCAGGAA ACAGCAGCTT TTACACCCGC
CTCTCTGGTG ATCTCCTCTG GATGAGCGGA AGACTTGATC TTTCAGGCCA TATTGCTGGC
GCCGGCAAAT CGATTATCGG AGTTGACAAC GGCACCATGA TCCTTGAACG GACAAGCCCG
ACGGGCGGCA TATTGGGAGT ACTTGACGCT CGCAAGATTG CCATCGGGGA TATTCAGCCC
GAAACACTTC CACTGATAGG CAACAGTGTC GGAACCGGCA TCATGGTAAG CAGTTACCCG
ATCAATCAAT CCTCTTTTTT TGACAAGCTG ACCCTGAACG GTTTTCTTGC AAAGGGTTGG
GATGTAGAAC TCTTCAGCAA TGCAAACCTG CTCGACTACC GCCCATCAAA CCCCCGTGAG
AGCTATTCAT TTGCCGATAT CCCACTCATC TATGGTCTGA ATGAACTGCG ACTTGTTTTC
CATGGCCCCC AGGGCGAGCA GCGGGTTGAA CGGCATATCT ACAATGTCGG ACGCAACATG
ATCGAACCGG GTAGCTGGAA CTATCAAATA ACAGCAACCA ACGCAACACA ACGTTCGCTG
CTCGCATCAC CAGATGGTGA TCCAGCGCCC CTCATGACCT GGAAGAGCAC ACTTGGCGTG
AACAAATGGC TCACTGCAAC CAATTATCTC GCATCAGCGC TCATCGACGA CGAACGTCAG
ACGTTTGCCG GAGCGGGGTT CAGCGGTTAC CTGAAAATGA TACAGCTCGA TCTGCAGATA
GCCCGCAATC TTGCCACCAG TCGGTTGGCC AGGCAGGCAG GTATCCAGAC ACGATTTGGA
CCATTAACAC TCTCCGTCCT GATGCAGGAG TATGATAAAG ATTGGCATAC AACAACCGGG
ACTCTTTCAT ATCTGAAAAA AGAGGATATC CGCATCGACG GCCTGAACCC CTTTTTCTTT
TTGACAAACT CCCGATTCTC GATGACGTTG GCCCAGACAG AGTTTGATGA ACTGCGGAAA
TCGAAGAGTG CCACCATGAC CAGCAGCAAC CGGACTTGGG GTATTGATCA TACACACACC
GTTACACTGG AACGAATGCT GGATGGTGAC ACAGAAAGTG ATGCCCTTTC TGGCAGCTCA
TATGCAAGCA TGACACGCCA AAACCTCTCA CTCAGGGCTG AAATTGGATA CCAGCTCCTT
CCTGAAAGAG TCATCAGCAC CGTTGGAGGT ACCTGCGAAC TGCGCCTCAA GCATGAATGG
CTGCTTCTCA ACAGCATTAC CTACACACCG CTTGGCAAAA CCCTGACTGC ATCAACAGGG
CTCAACCATA CCTTCAAAAA GATGGCAATG GGAGTTACAG GTAACTATAC CAGTGGCGGA
GCATGGGGTA TCGGTATCCA GCTCTCGACG AACCTCAGTC ATGAGCCAAA AAGTGGTCAA
TGGAATATCG ATGGAAGCCT GAGCAGCCAG CAGGCAGGAA TCTCCGCCCA GGCATACCTC
GACAAGAATC GCAACAGGGA GCTGGACCCC GATGAGCCCG AAATCAAGGA TGCCGGTTTT
TTTGTCAATC AACAAAGCAA TCCCGCACTC ACTGATGCAA AGGGTATCGC TTTTATTCAG
GGAATTTCTC CCAACATTCT GACGGATATC ACCATTTCAC CCTCAACACT TAAAGAGCTG
CTTTGGGTGC CTGCCGACAA AGGGGTACGT GTGGTACCAA GACCAGGTTA TCCTCTCCCG
GTAAAATTTC CCGTATGGGT CACCGGTGAA GTGAGCGGTA CCGTTTTCAA CAAGAAAGAG
GGCATTGAGG AACCTGCGTC CGGTATCACC ATTGAAGCTG TTGACAAGGA GGGAAAGGTA
GCTGGCAAGG CCCGGTCAGA ATATGACGGT GTTTACATTC TCGGAGCGCT CCCCACCGGG
AACTACACCT TGCGCGTATC ACCCGAACAG GCCGCAAAAC TTGGCACTAC AGCGCCATTC
AAGGAGCTGG TCATTCCAGC CGAAGGAGCA TATATCGACA ATATCAATCT GGTACTTGAG
CCGCTAACTG TTGAACCGGG CATTGAAACA CCTGTTGAAT CGAACGGGAA GGCTCCAGTC
GACTCCGGCA AAGAGAAATC ACTTCAAACT CCCCTGCTGC CCTGA
|
|---|
| Protein sequence | MSSLHNYFRV LRSSLLFFFW ICLATGHQTE LLYGEEKRTA ESPTALSEDD LLLCVVRLGG
ATLSGNLVTY SAPPGLFLPL GELSRSLELG ITVDPAKGVG SGHVALPSQS FMLDMAKSSI
IVDGNTYRYD PKLVVALTDD IYVESRLLAE WFAMRIDANR LDAAVDIRPF EPLPIQQRMA
RSQRGSNTWG YGSYNDPGYP LLNTPFRLLA GPSIDISLSS SLTGEGTANI TPGNSSFYTR
LSGDLLWMSG RLDLSGHIAG AGKSIIGVDN GTMILERTSP TGGILGVLDA RKIAIGDIQP
ETLPLIGNSV GTGIMVSSYP INQSSFFDKL TLNGFLAKGW DVELFSNANL LDYRPSNPRE
SYSFADIPLI YGLNELRLVF HGPQGEQRVE RHIYNVGRNM IEPGSWNYQI TATNATQRSL
LASPDGDPAP LMTWKSTLGV NKWLTATNYL ASALIDDERQ TFAGAGFSGY LKMIQLDLQI
ARNLATSRLA RQAGIQTRFG PLTLSVLMQE YDKDWHTTTG TLSYLKKEDI RIDGLNPFFF
LTNSRFSMTL AQTEFDELRK SKSATMTSSN RTWGIDHTHT VTLERMLDGD TESDALSGSS
YASMTRQNLS LRAEIGYQLL PERVISTVGG TCELRLKHEW LLLNSITYTP LGKTLTASTG
LNHTFKKMAM GVTGNYTSGG AWGIGIQLST NLSHEPKSGQ WNIDGSLSSQ QAGISAQAYL
DKNRNRELDP DEPEIKDAGF FVNQQSNPAL TDAKGIAFIQ GISPNILTDI TISPSTLKEL
LWVPADKGVR VVPRPGYPLP VKFPVWVTGE VSGTVFNKKE GIEEPASGIT IEAVDKEGKV
AGKARSEYDG VYILGALPTG NYTLRVSPEQ AAKLGTTAPF KELVIPAEGA YIDNINLVLE
PLTVEPGIET PVESNGKAPV DSGKEKSLQT PLLP
|
|---|
| |