Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1279 |
Symbol | |
ID | 6463709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 1337283 |
End bp | 1338044 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642727520 |
Product | ABC transporter related |
Protein accession | YP_002018161 |
Protein GI | 194336367 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAGTT CTCAAGTGGT TGATTCCTCT GTTGACGTAA GTGCTAATAG TCAACAACGT CCCCCTGTGT TGAGGATTAG TGATTTGTCG AAGTTTTATA TGATGGGGGA GGTGCGGGTT GATGCTTTGA AGCATATTTC GCTTGAGTTT CATGCGGGGG AGCTGGCGGT GCTGCTGGGG GCTTCGGGGA GCGGGAAATC GACGCTGCTT AATATTATCG GGGGGCTTGA TGTGCCCTCT TCGGGGAAAC TTTTTTTTCA TGGGAGAGAG ATGACTGCGG CCACGGAGGC GGAGCTGACG GCCTATCGTC GTCGTTCGAT TGGCTTTGTG TTCCAGTTCT ACAATCTGAT TTCAAGCCTT TCGGCGCTTG AAAATGTGCA GCTTGTGACC GAGATTGCCG ATAATCCCAT GCCTGCAGAG GAGGCCTTGC GGCTGGTGGA TCTTGGCCAT CGTCTGAACC ATTTTCCAGC ACAGCTTTCC GGCGGGGAGC AGCAGCGGGT GGCGATAGCG CGGGCGGTTG CGAAGCGGCC TGAGCTGTTG CTGTGTGATG AGCCTACCGG GGCGCTTGAT TTCCAGACGG GAAAACTGGT GCTTGATGTG ATCGAGAAGG TCAATCGGGA AATCGGTACG ACAACGCTTG TTATTACCCA TAATGCTTCG ATTGCGGGGA TGGCTGACCG GGTTGTGCGT CTGCGGAGCG GGGAAATTTC TGAGGAGAGG AGGAACCTTA CCCGGCTGTC ACCTTCTGAA CTGGTCTGGT AG
|
Protein sequence | MKSSQVVDSS VDVSANSQQR PPVLRISDLS KFYMMGEVRV DALKHISLEF HAGELAVLLG ASGSGKSTLL NIIGGLDVPS SGKLFFHGRE MTAATEAELT AYRRRSIGFV FQFYNLISSL SALENVQLVT EIADNPMPAE EALRLVDLGH RLNHFPAQLS GGEQQRVAIA RAVAKRPELL LCDEPTGALD FQTGKLVLDV IEKVNREIGT TTLVITHNAS IAGMADRVVR LRSGEISEER RNLTRLSPSE LVW
|
| |