| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1274 |
|---|
| Symbol | |
|---|
| ID | 6463718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1334836 |
|---|
| End bp | 1335291 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642727515 |
|---|
| Product | nuclear protein SET |
|---|
| Protein accession | YP_002018156 |
|---|
| Protein GI | 194336362 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2940] Proteins containing SET domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA ACATGTTCGT TATCATTCCC GTCATGCTTC TTATTGGCAT GATCGCCGGT
AGTGCAATCG GCTTTTTCCT TGCAAAAAAA AATTTCGCAG GCCAGAGAGG AGTGGTTACG
ATCGGAGCAT CAACCGTCAG CGGACGGGGA GCGTTTGCCC TGAAAAAGAT CAGTGAGGGC
GACATTATTG AGCGCTGCCC TGCCCTTGAG GTGACCGATC AGGACGTCGG GGGTGAACTG
CTGAACTATG TCTTTTACGG CAGCACAGAA AGCGCCCGCC TTGTGGTGAT GGGCAACGGT
ATGCTCTTCA ACCATTCATC GACACCCAAC GTCGCTTACT ACCGAGAGCA GGGAGCACTC
GGGGTGGAAC TTGTCCTCTA TGCGTTACGC AATATCAACG AGGGTGAAGA GCTCTTCTAC
ACCTACGGAG ATGACTGGTG GAGCACCAGG GCATGA
|
|---|
| Protein sequence | MNINMFVIIP VMLLIGMIAG SAIGFFLAKK NFAGQRGVVT IGASTVSGRG AFALKKISEG
DIIERCPALE VTDQDVGGEL LNYVFYGSTE SARLVVMGNG MLFNHSSTPN VAYYREQGAL
GVELVLYALR NINEGEELFY TYGDDWWSTR A
|
|---|
| |