| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1233 |
|---|
| Symbol | |
|---|
| ID | 6463411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1291887 |
|---|
| End bp | 1293419 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642727481 |
|---|
| Product | AAA ATPase central domain protein |
|---|
| Protein accession | YP_002018122 |
|---|
| Protein GI | 194336328 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0464] ATPases of the AAA+ class |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.627441 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTGGC TCGACGAACT CAAACTCAAT GTTGACGCGC GGGTAGCCGT CATACACCTC
GCAACCATCG ACGAAGAGGA GGCCCTGCGC ACCCTTTCCG GCTGGTCGCA ATCAAGCCGG
TGGCCTGCAG GAATGGGGCT CATCACCTGG GATATCGGCG ACCAGTTCCG CCACCTGCGC
GAGCCAGCGG TGACCTTCAG CAAACTGGCC GCCACCCCGG AAACGGTGCT TGACATCATC
GACGACTACA AGGGCTCCGC AACCTTCGTG CTCAAAGACT TTCACCATTT TCTGGAACAT
AACCGGCGTG TTTCACGTAT GCTGCGGAAC CTCGCATCGC GTCTTCCGTT CCGCAGCGAA
ACGGTGAACA TCATCATCAC CAGCCCCCAG TTTGCGCTTC CCGTCGAACT CCGTCACGAC
ATTCCAACCA TCGATGTCGG CAAGCCTGAC GGCAAACAGA TACTCGAACT GCTCGATCGG
GAAACCCGCT CGACAAGAGC GCTTGACAAC GCCACGCACG GCTTGCGCGA ACGTCTGGTC
GAAAGCGCCC TCGGCCTCTC CATTGTCGAA GCGGGAAGGG CCTTTCGCAA AGCCATCGTG
GTTGCCGGAG GCCATGGGCT CGACGAACGG AGTGTCCGGC AGGTGCTGAA CGAAAAACGG
CACATCATCC GTGAAAGCGG CGCTCTCGAA CTCTACCCCT ATACCGGCTC CATGAACAAC
GTCGGTGGAC TTGGCGCCCT GAAGGCGTGG CTCGATCAGC GTCAGGAGGC CTTCAGCCAG
GATGCGCGCG AGTATGGCCT CAGTATGCCC AAAGGGGTGG CCCTCATCGG GATCCCCGGA
ACCGGAAAAA GCCTCTGCGC AAAAGTAACC GCAGGCCACT GGGGGATGAC GCTGCTGAGA
ATGGATGTCG GCGCCATCTT CAGCGGCCTG CTCGGTTCGA GCGAACAGAA TATTCGCGAA
GCCATCCGGA TTGCCGAGGT TATCGCACCC TGCGTGCTTT GGGTTGACGA GATTGAAAAA
GCCTTCGCTG GCTCCATGGG CGACAGCGGC ACGGCAAGCC GGGTGTTTGC CACCTTCCTC
ACCTGGATGC AGGAAAAAAC CGCTCCGGTA TTTGTATTCG CCACCGCCAA CAACGTTCGG
CGCCTTCCCC CCGAACTCCT GCGCAAAGGC CGGTTTGACG AGGTCTTTTT CCTCGATCTT
CCCACCCACG GCGAGCGGAT AAAAATACTT GAAGTCCATC TCAGAGAGCG CGGCTATACC
ATGCTTTCGC AGCGCTTCAA CCTCGCCGCC GTCGCATCGG CAACCGAGGG GTTCGTCGGC
GCCGAACTTC AGGCGCTGGT CAACGACGCC ATGTTTCCCG CATTCCGCGA CAACCGCCGG
GAACTGGAAA CGGAGGATCT GCTCAACGCA GCCGGAGAGA TGGTTCCCCT CTCGGCATCG
CATCAGGAGC ATATCGAACA GTTGAGAACG ATGGTCAGAA CCGGACAGGC GCGCAACGCC
TCCGACGACC GGAATAGTTT GGCTGCGTCA TAG
|
|---|
| Protein sequence | MAWLDELKLN VDARVAVIHL ATIDEEEALR TLSGWSQSSR WPAGMGLITW DIGDQFRHLR
EPAVTFSKLA ATPETVLDII DDYKGSATFV LKDFHHFLEH NRRVSRMLRN LASRLPFRSE
TVNIIITSPQ FALPVELRHD IPTIDVGKPD GKQILELLDR ETRSTRALDN ATHGLRERLV
ESALGLSIVE AGRAFRKAIV VAGGHGLDER SVRQVLNEKR HIIRESGALE LYPYTGSMNN
VGGLGALKAW LDQRQEAFSQ DAREYGLSMP KGVALIGIPG TGKSLCAKVT AGHWGMTLLR
MDVGAIFSGL LGSSEQNIRE AIRIAEVIAP CVLWVDEIEK AFAGSMGDSG TASRVFATFL
TWMQEKTAPV FVFATANNVR RLPPELLRKG RFDEVFFLDL PTHGERIKIL EVHLRERGYT
MLSQRFNLAA VASATEGFVG AELQALVNDA MFPAFRDNRR ELETEDLLNA AGEMVPLSAS
HQEHIEQLRT MVRTGQARNA SDDRNSLAAS
|
|---|
| |