Gene Ppha_1228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_1228 
Symbol 
ID6462048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1285429 
End bp1286322 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content46% 
IMG OID642727476 
ProductTPR repeat-containing protein 
Protein accessionYP_002018117 
Protein GI194336323 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAATC GTTTACGTTT TTTTTATATC GCTATAATCG CGTTTCTGTT TACAGGTAAT 
GTTGCTTATG CACATAACGA AGAGGCTCAA CGTCTTTTGT CGAGTGGCGA AGCATACTGC
AAGTCAGGCA AGAATACGGA AGCTATAGCA GAACTGACAA AGGCCATTGA GCTTGAACCA
AAACTTTCAC CAGCAGACCT TTCAACAGCG TACTACAACC GGGCAGTTGC AAGGCGTACC
ATTGGAGACA GCCTGGGCTC CAAAGCTGAT TTCGAGAAGG TTGTTGATCT TGATCCAACT
CCGAGAGATG CTGCAGCTTA CCATAATCGC GGGATTGCCA AATCGACTCT GGGAGACAAA
GAGGGGGCTC TGGTTGACAT GAAAAAAGCA GCACTCCTTG GTAATATCCC TGCCCGTGAG
TGGCTGAAAA ATAATGGAGA GAAAAATCCA CTCTATACAG CCCTTGACGA TGCACAAAAC
CTGTTGTCAA GCGGCAAGGC AAAGCTTGCA TCAGGAGATC ACAAGGGAGC GATTGTCGAC
TTCACCAAGG CAATCGAACT TGATCCGAAA CTTGCTGCGG CATACTTTAA TCGTGGGATT
GCAAAAAGTT TGACGGGAGA GAACAAGAGT TCAAGAGAGG ACTTTGCAAA GAGCATCAAG
CTTGATCGTA CTCCGAAAGA TGCAGAAGCT TACTGTAATC GCGGGATTGC CAAATCCGCC
ATCAACGACA AGAAAGGGGC TTTGACTGAC TTTAATAAAG CCATTGATCT TGATCCGAAG
TATCGTGAAG CTTATTCCCG TCGCGGAAAA CTGAAAAACG AGATGGGAGA CAAAGCGGGT
TCTCTGGCTG ACGTTAAAAC AGCAACAGAA CTGAGCGCTA TAGCACACCC TTGA
 
Protein sequence
MQNRLRFFYI AIIAFLFTGN VAYAHNEEAQ RLLSSGEAYC KSGKNTEAIA ELTKAIELEP 
KLSPADLSTA YYNRAVARRT IGDSLGSKAD FEKVVDLDPT PRDAAAYHNR GIAKSTLGDK
EGALVDMKKA ALLGNIPARE WLKNNGEKNP LYTALDDAQN LLSSGKAKLA SGDHKGAIVD
FTKAIELDPK LAAAYFNRGI AKSLTGENKS SREDFAKSIK LDRTPKDAEA YCNRGIAKSA
INDKKGALTD FNKAIDLDPK YREAYSRRGK LKNEMGDKAG SLADVKTATE LSAIAHP