| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1217 |
|---|
| Symbol | |
|---|
| ID | 6463510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1272691 |
|---|
| End bp | 1275819 |
|---|
| Gene Length | 3129 bp |
|---|
| Protein Length | 1042 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642727465 |
|---|
| Product | protein of unknown function DUF450 |
|---|
| Protein accession | YP_002018106 |
|---|
| Protein GI | 194336312 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTCA GTGAAGATTC ACGAGTCAAA ATACCCTGCA TTCTGCATCT GGTCAGGCTT
GGCTACCAAT ACCTCTCCCT CAGGAGTGCC AAATGGGATA AAGAGAGCAA CATCTTCCCT
GAACTCTTCT CTGCCGCCAT CGTCCGGATC AACCCCGGTA TTGAGGCCGA CGACATCAAA
CGCTTGCTGG CCGATGTCCG GCTCTTGCTC GACAATGAGG ATCTCGGCAA GGCATTTTAT
GAACGGCTCA CGGAACGCTC CGGAATTCGG CTGATTGACT TTACCGATTT CCCTAACAAC
CCTAACAACA GCTTCCATGT TGTCACTGAA CTGACCTACA AAAACGGTGA TGACGAATTT
CGGCCTGATA TCACCCTGCT GGTCAACGGT ATGCCCCTGA TCTTCATTGA AGTCAAGAAG
CCAAACAATC GAGAAGGGAT TCTGGCCGAG CGCAACCGTA TCATCACCCG TTGCCGGAAT
TCCCGCTTCC ACCGTTTTGT CAACATCACA CAACTGATGG TGTTCTCCAA CAACATGGAG
TATGAAGATG GTTCTCCGCA GCCCATTGAG GGAGCCTTCT ACGCCACTCC ATCCTACGAC
GCACCTGTTT TCAACTACTT TCGTGAAGAA GAAGAGCTGA ACCTCTCCGA ACTTCTTGCC
GACGAGAATG ACAGGATCGA AAACGAGGTA TTGCACGACA ACAATCTGAA CGTCATCAAG
CACAGCCCGG AGTTTCTCAG CAACAAGTCG CCCGGCACGC CGACCAACCG CCTCTGTACC
TCTCTCTTTA GCCGCGAACG CCTCTCATTT CTTCTGCAAT ATGCACTGGC CTTTGTCAAC
GAATCCGATG GCCAGCAGAA GCACGTGATG CGTTACCCGC AGCTCTTTGC CACCAAAGCA
ATTGAAAAAA AGCTGGACTC CGGCATTCGC AAAGGGATTA TCTGGCATAC CCAGGGCAGT
GGAAAAACCG CGCTGGCCTA TTACAACGTC CACTTTTTGA CCGACTATTT CCAACGTAGC
GGCATCATTC CAAAGTTCTA CTTCATTGTT GATCGTCTCG ATCTGCTCAT ACAGGCGCAA
CGGGAGTTTT CCAGTCGCGG CCTGACGGTG CATACCATCG GCACTCGCGA GGACTTTGCC
CGCGATATCA AAGCCAACAA TGCACTCCAC AATCACTCCG GCAGGCCGGA GATTACCGTT
GTCAATATCC AGAAGTTCGA GGATGATCCC GATGTGGTTC GTGCCGAGGA TTACGATGTC
ACGATCCAGA GAATCTATTT TCTTGACGAA GTTCACCGCA GCTATAACCC GACAGGCAGC
TTTCTTGCCA ACCTCAGCCA GTCAGACCAG AATGCTATCA AGATTGGTCT CACCGGCACA
CCGCTTCTGG GGGAGGACTA CAACTCCCGT GCACTCTTCG GCGACTACAT TCACAAATAC
TACTATAACG CCTCCATTGC CGATGGATAT ACCCTGCGCC TGATCCGCGA GGAAATTGCC
ACAAGTTATA AACTCTCACT GCAGGCGGCC CTTGCAGCGG TGGAACTCCA GCAGGGGGAT
ATCGAAAAAG AGGAACTCTA CGCCCATCCC CGTTTTGTTG AACCGATGCT CGCTTACATC
CTTGACGATT TCGAGCATAG CCGTGGCGCC CTGAACGACT CCACCATCGG CGGATTGGTC
ATCTGCGACA GTTCCAAACA GGCCCGGGAA ATGTTCAAAA TCTTCCACTC CCGTAAGGCT
TCCAATAGCG TCAAAAAAGT CACCACTGAA GATGAAGACT CGCTTGAAGA GCTGCCAATG
GTTGCTGTCC CCACGCTCTT TTACGCAAAC CAGCAGAGCG AGGCAAACAA GGTGAAACGC
TGCGCCCTGA TTCTGCATGA TGAAGGCAGC AAGGAGGATC GCAAGAGATC GGTGGAGGAG
TTCAAAGCCG GCAAGATCGA CCTCTTGCTG GTCTACAACA TGCTCCTCAC CGGTTTTGAC
GCCAAAAGGC TGAAAAAGCT CTATGTGGGC CGGGTAATCC GCAAACATAA CCTGCTTCAG
GCCCTCACCC GGGTCAATCG CACTTACAAC GATTTTCGTT ACGGTTATGT GGTTGATTTC
GCCGATATCC GTAAAGAGTT CGATGCCACC AATAAAGCCT ATTTCGAAGA GCTGCAGGCC
GAACTTGGCG ACGAACTTGA GCACTATTCC AATCTTTTCA AGTCCCCCGA AGAGATAACC
CGGGAGATCG AAGCGATCAA GGATATTCTC TTTCGCTTTG ACATTCAAAA CGCCGAGCAC
TTCTCGCAGC AAATCAGCCA GATTCAGGAT CGTGCCACCT TGCAGGCGCT CAAAAAAGCG
TTGGCCGATG CCCGCAGCCT CTATAATTTG ATCCGGATGC AGGGCGACTA CAGTTTGTTG
CAGCAGCTCG ATTTCCAGAA ACTCAACCAG CTCTACCGCG AAACATGCAA CCACCTCGAC
CTGTTGAACC TGAAGGAGAG CATCGAATCA AACGCCGATA CCACCAATCT GCTCAATATC
GCTCTGGAAG ATGTGCTCTT TATGTTCACC AAGGTGCGGG AAGAGGAGCT GGTGTTGGCC
GACAAGCTGA AAAATACCCT GCGTAAGACT CGCGAAGCCC TCATCGATAA CTTCGACCAG
CAAGACCCCA GGTTCATCAC CCTGAAGGAG GAGCTGGAGC GGCTCTTCAA AAAGAAGAAA
CTCAACGAGG TGACGCAGGA GGAGATGAAC GCCAATATCG GTGCGCTCAA CCAGATCTAC
GAGCAGGTCA AGGAGCTGAA CCGTAAGAAC AACCAGCTCA GGGCAAAGTA TCACGGCGAC
CCGAAATATA CCCGCATTCA CAAACGGCTG CTGGAGCGAG GTTTGCTAAC CGCATCGGAG
CGTCGCATCT TCGACGCATT AACCGGCGTC AAACAGCAGG CCGACGATCA GGTGCTGCAG
AACACCCAGC TTTTGGCAAA CGAAAGCTAC TTTGAGGGGA TGATGATGCC GATGGTCATT
GGCGAATTTC AGGCCCGCCG TAAAATAAAA CTCAACCCGG ACGTCTCCCG AACAATCAAC
CGGCTGGTAG TGACCGAATA CATGAATGAA TTTATCTCAG GCAACAGAAA AGGAGCAAGT
GCGTGGTAA
|
|---|
| Protein sequence | MIFSEDSRVK IPCILHLVRL GYQYLSLRSA KWDKESNIFP ELFSAAIVRI NPGIEADDIK
RLLADVRLLL DNEDLGKAFY ERLTERSGIR LIDFTDFPNN PNNSFHVVTE LTYKNGDDEF
RPDITLLVNG MPLIFIEVKK PNNREGILAE RNRIITRCRN SRFHRFVNIT QLMVFSNNME
YEDGSPQPIE GAFYATPSYD APVFNYFREE EELNLSELLA DENDRIENEV LHDNNLNVIK
HSPEFLSNKS PGTPTNRLCT SLFSRERLSF LLQYALAFVN ESDGQQKHVM RYPQLFATKA
IEKKLDSGIR KGIIWHTQGS GKTALAYYNV HFLTDYFQRS GIIPKFYFIV DRLDLLIQAQ
REFSSRGLTV HTIGTREDFA RDIKANNALH NHSGRPEITV VNIQKFEDDP DVVRAEDYDV
TIQRIYFLDE VHRSYNPTGS FLANLSQSDQ NAIKIGLTGT PLLGEDYNSR ALFGDYIHKY
YYNASIADGY TLRLIREEIA TSYKLSLQAA LAAVELQQGD IEKEELYAHP RFVEPMLAYI
LDDFEHSRGA LNDSTIGGLV ICDSSKQARE MFKIFHSRKA SNSVKKVTTE DEDSLEELPM
VAVPTLFYAN QQSEANKVKR CALILHDEGS KEDRKRSVEE FKAGKIDLLL VYNMLLTGFD
AKRLKKLYVG RVIRKHNLLQ ALTRVNRTYN DFRYGYVVDF ADIRKEFDAT NKAYFEELQA
ELGDELEHYS NLFKSPEEIT REIEAIKDIL FRFDIQNAEH FSQQISQIQD RATLQALKKA
LADARSLYNL IRMQGDYSLL QQLDFQKLNQ LYRETCNHLD LLNLKESIES NADTTNLLNI
ALEDVLFMFT KVREEELVLA DKLKNTLRKT REALIDNFDQ QDPRFITLKE ELERLFKKKK
LNEVTQEEMN ANIGALNQIY EQVKELNRKN NQLRAKYHGD PKYTRIHKRL LERGLLTASE
RRIFDALTGV KQQADDQVLQ NTQLLANESY FEGMMMPMVI GEFQARRKIK LNPDVSRTIN
RLVVTEYMNE FISGNRKGAS AW
|
|---|
| |