| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1207 |
|---|
| Symbol | |
|---|
| ID | 6463367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1261735 |
|---|
| End bp | 1263183 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642727455 |
|---|
| Product | RNA polymerase, sigma 54 subunit, RpoN |
|---|
| Protein accession | YP_002018096 |
|---|
| Protein GI | 194336302 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATA TCCGGCTTCA ACAAAGACAA TCATTACAGC TCTCTGCACA GCAGATTTTA
AGCAGTCAGC TCCTTCAGCT TCCGATGCTC AACCTTGAAC AGCGTATTTA TGAGGAGTTA
CAGGAAAATC CGTTACTTGA AGTAGTTGAA GAAAGTAAGG AGAGTGTCGG TGAAGTCGTT
GCAGGCAGTG ACGGGTCGAA TGGTGACGAT ATGTTCGATG CGGTTGAACG CTTCAGTAAA
AGTGCACTCA AGGAGCGCTC CGATGCGCCA TTTTCTGTCG AAGATTCTGA AGGAAGGCTC
AACTTCACCT ATGAAGGCGG CTCAAAGGAG AGGTTCTTTC AGGCCGTTCA GCATGACAGT
TTCCATGATA CCCTGCTCCG GCAGTTAACA TTACATGAAG AGGTCGGGGA GCGGGAGGCA
AGGATTGCGG CCGAGATTCT TGGTAATCTT GACGGCGACG GTTATTTTGG CGAGGACTAT
GGAGTGATTG TTGACAGTCT GCACTTTGAT GGCCTTGATA TCAGCCAGAG GGAAGTCGAG
GAAGTTGTGC GCAAAATTCA TTTTCTTGAT CCTCCTGGTA TTGCCGTCAA AGATTTGCGT
GAGCGGTTTC TTGTTCAACT GCAGGCCGGT TCGGAGCGTT ATCCATCAAA GACGTATGAG
GTTGCGACAC GGATTCTTCG TGATCATTTT GATGATTTTC TGCACAGGCG CTTTGAACTG
TTGCTGAAAA AACTTGCTGA GACAAAAGAG GGCGTTGAAG CGGCTGTTTC GGCCATCATC
CGGCTTGATC CTCATCCCGG CATTTTTCAG GATGAGGGTG GATATATTAC GCCGGACTTT
CTTGTGAGCT ATGAGAATGG TGCATTGATT GCAGTGCTCA ATGACAGAAG CGCACTTTCT
GTCAAGGTTA CCGACCGTTA TCAGGAACTT CTGAAAAACA GGAAAGCTCC AAAAGAAGAA
AAGCAGTTTA TACGGAAAAA TATTCTGCGG GCCAATGAGT TTACAAGCGC CATTGAGACC
AGGCGCCAGA CGCTGCTGAA GGTGATTGAA GCGTTGATGA AACGGCAATA TGGCTTTTTT
GTTTTTGGCC CCGAACGTGT GGTGCCACTT GGCATGAAAA CTATTGCTGC CGATACCGAT
CTTGATATAT CGACGATCAG TCGGGCCGTC AATGGAAAAT ATGTACAGAC CCGCTTTGGC
GTTTTTGAGC TGAAATATTT TTTCAGCACA GGACTTTCGA CCGGGGAGGG TGAAGATCTG
TCAAGCAAGG TTATTCGTCA GCAAATTGCT GATATGATCA GCGGGGAGGA TTCCGCAAAT
CCCCTGAGTG ATGAGAGTAT AACGGAGATG CTTATGAAAT GTGGAATACA TATTGCAAGA
AGAACGGTTG CAAAATATCG GGAACAAATG CAGATTCCAG TTGCAAGATT AAGAAAAAAA
ATATTTTGA
|
|---|
| Protein sequence | MADIRLQQRQ SLQLSAQQIL SSQLLQLPML NLEQRIYEEL QENPLLEVVE ESKESVGEVV
AGSDGSNGDD MFDAVERFSK SALKERSDAP FSVEDSEGRL NFTYEGGSKE RFFQAVQHDS
FHDTLLRQLT LHEEVGEREA RIAAEILGNL DGDGYFGEDY GVIVDSLHFD GLDISQREVE
EVVRKIHFLD PPGIAVKDLR ERFLVQLQAG SERYPSKTYE VATRILRDHF DDFLHRRFEL
LLKKLAETKE GVEAAVSAII RLDPHPGIFQ DEGGYITPDF LVSYENGALI AVLNDRSALS
VKVTDRYQEL LKNRKAPKEE KQFIRKNILR ANEFTSAIET RRQTLLKVIE ALMKRQYGFF
VFGPERVVPL GMKTIAADTD LDISTISRAV NGKYVQTRFG VFELKYFFST GLSTGEGEDL
SSKVIRQQIA DMISGEDSAN PLSDESITEM LMKCGIHIAR RTVAKYREQM QIPVARLRKK
IF
|
|---|
| |