| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1154 |
|---|
| Symbol | |
|---|
| ID | 6463534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1202944 |
|---|
| End bp | 1205721 |
|---|
| Gene Length | 2778 bp |
|---|
| Protein Length | 925 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642727402 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_002018046 |
|---|
| Protein GI | 194336252 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAG AACCTTACCA GAGAGCCACT CCTGCGTGGT TTGAATCTTT TCCCGAATCT
GTGCTTATCA TTGATACTGA GGGTACCATT CTTGACGCCA ACGAAACCTT TGCTTCCCGC
TTTCAAAAAA GAGTGCACGA GTGCATCGGC ACCAATATGT ACAGCTTGCT GGCTCCTGAA
CTTGCATCAC GAAGAAAAGA AAAAGCCGAC GAGGCCATCT GCACAGCCAG GCAAATATCC
TGGGAGGATG AACGAAACAA CCGAATCCTG CGCAACACCA TCTATCCAAC CCTTTCATCA
GAAGGACAAG TCACTCAACT GTTAATTATT ATCCAGGATG TGACTGAGCT GAAGTTAAGA
GAGCTGAGTC TGAAAAATGA GCAGACCTTC AGTAAAACCA TTATCGACAC CATTCCAGGC
ACCTTTTACA TTCTGGATGC CAACGGACAA TATGTAGGAT GGAATTCGTA TCAGCGTGAA
CAAATTGCCG GAAAAACTGA ACAAGAGATG GGGAGTTTTC ATGCCATTGA GACCATTCAT
CCCGACGATC AGCATGTTGT CGCAGAAAGC ATGCGGGACA TTCTCACCCT TGGTACTGAA
GTAACCGGGG AAGGACGGGT ACTCTTGCGG GGAGGGCCGG AGTATCGCTG GCTCATCATG
ACCGGAAAGC GCTTCATCAT CGATGATAAG CCATTCATTG TCGGAATGGG TATTGACATT
ACCGAACGCA AACAAACAGA AAAAGCGTTA CAGGAAAACG AGGAACGATT CCGGAAGCTT
TTTGAAAGCC ATTCAGCCAT TCAGCTTATT CTGGATCCTG ATAACGGCAA TATCGTTGAT
GCCAATCAAG CGGCTGAGGA CTTTTATGGC TGGTCAATTG AAGAACTCAA AAAGATGCAT
CTCCATGATA TCAATGCTCT CCCTGCCGAT GAGGTAAACA AGATCATGAA AAAATGGCTG
GCATCAAAAC AACTCAATTT TTCATTTCGT CACCTCAGAG CGAACGGTTC CATCCGTGAT
GTAGAGATAT TCGCCAATAA AATCGAGATA ACGGGCAAAG CTTTTATCTA CTGTATTATT
CACGATATCA ATCAACGCAA GCACTTTGAA GCCCTCTCGG CATTTCGCCT GCACCTGATC
GAAATGGCTG AGACCCAATC TGTGGAAACA TTACTTCTGA CTGCCATCAA CGAAGCTGAA
CGACAGACAA ACAGTGCCTT GGGGTTTTGT CACTTTATCG AAAATATTAC CCCATCCCGC
ACGATACAGG TCATGTCGTC CAACATGCAA AAAAATAAAC ACATTGTCAG CGAGGTTGGC
CAATCACATC ATCCTTCAGT GAATAATGCC GAGTTCTGGG CTGATATCAT GCGGGAAAAA
AAAGCTGTAA TTAACAATAG TTACGATCGC AATAAATATC AGGATAATCT TCCGCAATCC
CACCCTGTTA TCAGACGAAC GCTGGTTGTT CCCATGCTGC AAGGAGATCG GATCATTGCC
ATTTTGGTAG TTGTCAATAA ACCATCCGAT TATGATGACG ATGATATCCG TTGGGTCACC
ATGCTTGCAA GCATCGCATG GGACATCGTT GCCAAAAAGC TTGTCGACGA GGAGCGGGAA
AAATTGCAAT GCCAGCTTCA GCAATTCCAA AAAATGGAGG TGGTGGGACA GCTTGCCGGA
GGTATTGCCC ACGATTTCAA CAACATGATG GCTGTGATTC TTGGACATAC CGAAATGACC
ATGGAACTTC TTGAACCCGC CTTGCCGATT TATGCCAATC TGGAGATCAT CCACAAAGCG
GCCTCACACT CTGCCGATCT GACCCATCAA CTTCTCGCAT TTGCCCGAAA GCAAACCGTG
ATGTCAAAAA TTCTCAAAAT AAACAGTGTC GTCGAGGAGA TGCTGCCAAT GTTAAGGCGC
TTGATCGGCG AGAATATTTC GCTGGTCTGG ATACCCGAAA AAAGGCCCAT TAAAGTCAAG
ATCGATCCCG CACAAATCGA CCAGATTCTT GCCAACCTCT GCATCAATGC ACGCCATGCC
ATCGCTGGTT CAGGCAAAAT CACCATTGAA ACCTCTCTGG TAACCATTGA CCAAACTGAT
GGTACTACCA TTCCTCCTTA CCTTGCACCC GGTGACTATG TAACGCTTGC CGTCAGCGAT
AATGGCTCCG GTATTGAAAA AAAGGATCTG CCCCATATTT TCGAACCATT CTTTACCACA
AAAGAGGTGG GAAAAGGCAC CGGAATGGGA CTTTCTACAG TATATGGCAT TGTAAAACAG
AACAACGGTT CTATCGAATG TGAAAGCAAT CCAGGTAAGG GAACATGCTT CAGAATCTCT
TTTCCCCTCT TTAATGACTC TGCTGATCCC GTTGAAAGTG AACAACAGGC TGAACCGGAA
AAAAAGAGAG GCACAGAAAC AATACTCATA GTCGAAGATG AGCCTGATAT ACTGAAACTC
TGCAAGCTCA TGCTTGAAAG CAGGGGATAC AAGGTACTCC CAACCACGAC CCCCAGTGAT
GCAATCAAGA TGATAAAGCA ATATAAAGGC AACATAAACC TGCTTCTGAC CGATGTGATT
ATGCCTGAAA TGAACGGCAA TGAACTCTCC AGAAAACTGC AGTCAATCAG ACCAGATCTG
AAAACACTCT TTATGTCAGG GTATGCAACA GACATTGTTT CTAATCACAA AATGATCGAT
ACCGGGACAC ATTTCATTCA AAAACCATTT TCTTTAAATG CGCTCATAAA AGCGGTACGT
GAGTCACTGA ACCATTAA
|
|---|
| Protein sequence | MTVEPYQRAT PAWFESFPES VLIIDTEGTI LDANETFASR FQKRVHECIG TNMYSLLAPE
LASRRKEKAD EAICTARQIS WEDERNNRIL RNTIYPTLSS EGQVTQLLII IQDVTELKLR
ELSLKNEQTF SKTIIDTIPG TFYILDANGQ YVGWNSYQRE QIAGKTEQEM GSFHAIETIH
PDDQHVVAES MRDILTLGTE VTGEGRVLLR GGPEYRWLIM TGKRFIIDDK PFIVGMGIDI
TERKQTEKAL QENEERFRKL FESHSAIQLI LDPDNGNIVD ANQAAEDFYG WSIEELKKMH
LHDINALPAD EVNKIMKKWL ASKQLNFSFR HLRANGSIRD VEIFANKIEI TGKAFIYCII
HDINQRKHFE ALSAFRLHLI EMAETQSVET LLLTAINEAE RQTNSALGFC HFIENITPSR
TIQVMSSNMQ KNKHIVSEVG QSHHPSVNNA EFWADIMREK KAVINNSYDR NKYQDNLPQS
HPVIRRTLVV PMLQGDRIIA ILVVVNKPSD YDDDDIRWVT MLASIAWDIV AKKLVDEERE
KLQCQLQQFQ KMEVVGQLAG GIAHDFNNMM AVILGHTEMT MELLEPALPI YANLEIIHKA
ASHSADLTHQ LLAFARKQTV MSKILKINSV VEEMLPMLRR LIGENISLVW IPEKRPIKVK
IDPAQIDQIL ANLCINARHA IAGSGKITIE TSLVTIDQTD GTTIPPYLAP GDYVTLAVSD
NGSGIEKKDL PHIFEPFFTT KEVGKGTGMG LSTVYGIVKQ NNGSIECESN PGKGTCFRIS
FPLFNDSADP VESEQQAEPE KKRGTETILI VEDEPDILKL CKLMLESRGY KVLPTTTPSD
AIKMIKQYKG NINLLLTDVI MPEMNGNELS RKLQSIRPDL KTLFMSGYAT DIVSNHKMID
TGTHFIQKPF SLNALIKAVR ESLNH
|
|---|
| |