| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1148 |
|---|
| Symbol | |
|---|
| ID | 6463093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1198638 |
|---|
| End bp | 1199810 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642727396 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_002018040 |
|---|
| Protein GI | 194336246 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGACC AGATCCTGAT ATCTGCGATT TTCCGTTCAC GGAAACGGGC CTTCTGTATC
TACAGGAAGC CTCCCCTGTC ACTATTCCGA CAGATAACGT GTTTCGTTGT TTTTTTTGTC
ATAGCCGTTA CGATCACTCC TCTTTTTTTG CTTGCACAAA CAGGTGATGA TTCGTTGCGC
TCACCGTTTC CAATAAACTC ATATATCGTA AAGGAGCGAG GTGGGTCTAA ATTCCTGATG
GCAAAGGATA TAGAGAAATC CGTTTCCCCG GCAAGTCTTA CCAAGATACT GACTTGTATC
ATGGCAATTG AAAGTGGTCG ACTGGAAGAG GATGTGCTGA TTACCAAAGA GTCGACCCTT
GTTGAACCCT CAAAAGCGGG GTTTAAACCG GGTGAGAAAA TCAGGCTTAT CGATCTGGTC
AAGGCGGCGA TGGTCAACTC AAGCAATGAT GCTGCATTTG CCATAGCCAT ACATCTTTCC
GGCGATGTTG AATCATTTGT AGCGGCAATG AACTACAGGG CACAACGGAT TGGAATGAGA
AATTCCAGGT TCACCAACCC TGCCGGTTTT GATAAAGCTC TCTACGCTGG CAATAGTTCT
ACGGCAGAGG ATCTTTTACA TCTTACGGAA TATGCAGTTA AAAATCCTGT TTTTAACCAG
ATCGCCCGGC TTGAACAGGT TGTTTTTACG GAGCAGACAA CGCGCAAGGT TTATTCCCTG
AAAACCCATA ACAAGCTTCT TGATAAATAT CCTTATGCTG TTGGTATTAA AACTGGTTAT
ACTTCGACGG CTGGAAGGTG CCTGATTGCC AGAGCGATCA AGGATAACCG TGATATTCTT
CTGGTGATGC TGAATGCGAA AACAGATCGA TGGACTATTG CCGCTGATAT TTTTGACTCG
GTTTTTGCAA TCAACCGACC GAATGCTGAC TGGCTGCGTC AATCGAATCG GAGAAATTCC
GGTGTATCAA GGGTTGGTCA AGGAGTGTAT AGTATGTCGA AGTCCAGATA TCAGATGAAA
AAAAAGGTGA CGAATGGGGC GAAACAAGGT CATAAGCTGA AAAATCGAGG GGTTGTTTCA
GCAAAATCGC TCAAAAAAAA CAGAAAGAGA GTGGCGCGTT CCTATGCATC GGTGGTTGGG
TGTCATGTCG CTCATGATGA TGCGAGTTCT TGA
|
|---|
| Protein sequence | MPDQILISAI FRSRKRAFCI YRKPPLSLFR QITCFVVFFV IAVTITPLFL LAQTGDDSLR
SPFPINSYIV KERGGSKFLM AKDIEKSVSP ASLTKILTCI MAIESGRLEE DVLITKESTL
VEPSKAGFKP GEKIRLIDLV KAAMVNSSND AAFAIAIHLS GDVESFVAAM NYRAQRIGMR
NSRFTNPAGF DKALYAGNSS TAEDLLHLTE YAVKNPVFNQ IARLEQVVFT EQTTRKVYSL
KTHNKLLDKY PYAVGIKTGY TSTAGRCLIA RAIKDNRDIL LVMLNAKTDR WTIAADIFDS
VFAINRPNAD WLRQSNRRNS GVSRVGQGVY SMSKSRYQMK KKVTNGAKQG HKLKNRGVVS
AKSLKKNRKR VARSYASVVG CHVAHDDASS
|
|---|
| |