| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1119 |
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| Symbol | |
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| ID | 6463284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 1152611 |
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| End bp | 1154032 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642727365 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002018015 |
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| Protein GI | 194336221 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAAAC TGAAGAAAAA TGGCGTATGG GTACTCCTGC TTGTGTTGAT GGGCAGCGCA
ATGGCGGCCT GCAGTTCCGT CGGAGAGTAT AAAAAACCGG AAGTGGCGTT ACCTGCAGCT
TACCGTGGTG TTGCATCCGG GGTTAGTAAT GCGGATTCTC TCATCTCCCT GTTACCCTAC
CGGAGCTTTT TTGCCGACGA GGCATTACGG ACGTTGATTG ACAGTGCGAT AGTGAACAAT
ATTGATCTGC AGGTAGCACT GAAAAATATC GACTACGCCC GACAGAGCCT GAACTCTGCA
AGGCTCGGAA TGCTTCCTAC ACTCAACATT GGCGTTGACG GAAGCCTCAG CCGTCCCTCT
GATAATGGCC CCCAGGCAAA AGCGGAACCG GACAAAACAA CTGAAAATTA TACGGCATCA
GCATCCGCTT CATGGGAAGC CGATATCTGG GGGAAGATCC GCAGCAGAAA AAAATCGGCT
CTCGCTTCAT ATCTGAAAAC AGGTGAAGCT GCCAGAGCTG TGAGGACGAG ACTGGTGGCA
GATGTGGCTG ATGGGTATTA TAACCTGCTT ATGCTTGATG CGCAGCTCGC CATGTCGAGA
AAAAACCTTG CACTTGCCGA TACGACGCTG CAGATGATCC GCCTTCAGTA TGATGCCGGT
CAGCTCACCT CTCTTGCCGT GCAGCAGCAG GAGGCCTCAA GACAATCCAT AGCGCTCGCG
ATTCCGCAGC TTGAACAGAG AACCGCCGTG CAGGAAAATG CCCTCAGTTT GCTCTGCGGC
AGGATGCCGG CAACTATTTT TCGTGACCGA TCCCTTTTCA CTCTCAAGGT GGTTGATACG
ATTCCGGCTG GCATTCCCTC TGCCCTGCTG CAGAACCGGC CTGATGTCCG GGCTGCAGAG
TTGGCTGTAA GAGCGGCTCA TGCCAATATG GGAGAAGCGA AAGCAACCCT TTATCCCTCT
CTGACGATTA CGGCTGAAGG AGGTGTGAAT GCACTCCGTT CAAGCGATTG GTTTACCTTT
CCAGGCTCTC TCTTCGGTTT TGTACAGGGC GCCCTTTTGC AGCCGATTTT TCAGCATGGT
CAGTTGAAAG CTAAATACGA ACAGTCAAAA ATAGAACGGG ATCAGTCGGA ATTCGCATTC
AAGCAGGCCG TACTCAAAGC GGTAGGAGAG GTCTCCGATG CATTGGTTGC AGTTGAAAAG
GTAAAAACTC AGGAGCTGAT TGCGGCGGAA CGGGTTGCAA CCCTTCAGAC TGCACACTCC
AACTCAGGAA TGCTCTTCCG GAGTGGCATG GCGACCTATC TTGAAGTTAT CGTAGCCCAG
ACCAATGCCT TGCAGGCTGA ACTTGCTCTT GCTGATATAC GGCGCCAGCA TCTTGCGGCA
CTGGCTGAAC TCTATCGTTC ACTTGGCGGG GGATGGCGTT AA
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| Protein sequence | MRKLKKNGVW VLLLVLMGSA MAACSSVGEY KKPEVALPAA YRGVASGVSN ADSLISLLPY
RSFFADEALR TLIDSAIVNN IDLQVALKNI DYARQSLNSA RLGMLPTLNI GVDGSLSRPS
DNGPQAKAEP DKTTENYTAS ASASWEADIW GKIRSRKKSA LASYLKTGEA ARAVRTRLVA
DVADGYYNLL MLDAQLAMSR KNLALADTTL QMIRLQYDAG QLTSLAVQQQ EASRQSIALA
IPQLEQRTAV QENALSLLCG RMPATIFRDR SLFTLKVVDT IPAGIPSALL QNRPDVRAAE
LAVRAAHANM GEAKATLYPS LTITAEGGVN ALRSSDWFTF PGSLFGFVQG ALLQPIFQHG
QLKAKYEQSK IERDQSEFAF KQAVLKAVGE VSDALVAVEK VKTQELIAAE RVATLQTAHS
NSGMLFRSGM ATYLEVIVAQ TNALQAELAL ADIRRQHLAA LAELYRSLGG GWR
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