| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1063 |
|---|
| Symbol | |
|---|
| ID | 6462077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1094993 |
|---|
| End bp | 1095856 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642727311 |
|---|
| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
|---|
| Protein accession | YP_002017961 |
|---|
| Protein GI | 194336167 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACCCTC TTTTGGTCAA ATCCTTTGCA AAAATCAATC TTGGTCTTCT CATCACAGCC
AAACGCCAGG ATGGATACCA TACGCTTGAG ACTATCTTTG CACCAATCAA CTGGTATGAT
ACCATCGAAT TCAGTGACTC CGAAAAGATT TCGATGAGCT GCTCAAATAG TGATCTCCCT
GTTGACGATA ACAATCTTTG TATAAAGGCA GCCAGATCTC TTCAACAGTT TGCCGCTGTC
CGGAAAGGCA TAGCCATGAA GCTTCAAAAA CAGGTGCCTT TTGGCGCCGG GCTTGGAGGT
GGCAGCAGTG ATGCTGCAAC GGTACTCAGA GTGCTCAATG AACTCTGGAA GGTCAACGCA
TCCCCTGCCG AATTGCACGC TCTTGCAGTG AAACTTGGTG CCGATGTCCC CTATTTTCTC
TCTATGAAAG GTCTTGCCTA TGCGACAGGC ATCGGTGATG AGCTTGATGA TCTCGCTCTT
ACACTTCCTT ACTATATCGT TACTGTTTTT CCCGAAGAGC ACATTGCAAC GGTTTGGGCA
TACAAGAATT TCTATTCCCG GTTTGATCGT GAACTTCCTG ATTTGAAAAA ACTGCTCTCA
GAGCTTTGTC TTTCTGGAAA AAAGGAGGGT TTACCAGCCT TTGAAAATGA TTTCGAGCCA
GCCGTATTTG ATCATTTTCC CGCCGTTCGC AAAGTCAAAT TAACACTGCT GGAAGCAGGA
AGCATCTTTT CCTCCCTTTC CGGTAGTGGT TCAGCAGTTT TTGGGCTTTT CGAGAGGGAG
GATGAAGCAC TGGCAGCCAT GAAGCTTTTA CCCGAAGCTT ATCGTAAAAA CCTTACTCCT
CCAGGTTTTT GCATGGCACA ATAA
|
|---|
| Protein sequence | MHPLLVKSFA KINLGLLITA KRQDGYHTLE TIFAPINWYD TIEFSDSEKI SMSCSNSDLP
VDDNNLCIKA ARSLQQFAAV RKGIAMKLQK QVPFGAGLGG GSSDAATVLR VLNELWKVNA
SPAELHALAV KLGADVPYFL SMKGLAYATG IGDELDDLAL TLPYYIVTVF PEEHIATVWA
YKNFYSRFDR ELPDLKKLLS ELCLSGKKEG LPAFENDFEP AVFDHFPAVR KVKLTLLEAG
SIFSSLSGSG SAVFGLFERE DEALAAMKLL PEAYRKNLTP PGFCMAQ
|
|---|
| |