| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1029 |
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| Symbol | |
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| ID | 6462107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1064523 |
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| End bp | 1065455 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642727280 |
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| Product | malate dehydrogenase |
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| Protein accession | YP_002017930 |
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| Protein GI | 194336136 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0039] Malate/lactate dehydrogenases |
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| TIGRFAM ID | [TIGR01763] malate dehydrogenase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00758057 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAATAA CAGTTATCGG AGCGGGAAAT GTAGGTGCTA CTGCCGCCCT TCGCATTGCT
GAAAAACAGC TCGCAAAAGA GGTTGTGCTG ATTGATATCG TTGAAGGCAT CCCTCAGGGA
AAAGCTCTCG ACATGTACGA GTCCGGAGCT GTCGCTCTTT TCGATACCAC TGTCCTTGGA
TCCAACGATT ATAAAGATTC TGCAGATTCT GATATTGTGC TCATTACTGC CGGTCTGGCA
AGAAAACCCG GCATGTCAAG AGAGGATCTT CTGAAGATAA ACGCCACAAT CATCAGGGAT
GTTACCACAG AGGTGATGAA ATATTCAGCC AACCCGATCA TCATCATGGT CTCGAACCCG
CTGGATGTGA TGACCTTTGT TGCATGGAAG GCAAGCGGTC TTCCAAAAGA GAGAGTAATC
GGTATGGCAG GTGTTCTTGA TACTGCGCGT TACAAAAATT TTATAGCCGA AGCATTGGAT
GTTTCCATGC AGGATATCAG CGCAATGGTA CTTGGCGGTC ACGGAGATTC AATGGTGCCG
ATCGTAAATT ATACCAATGT TGCCGGTATA CCGTTAACAG AACTGCTTCC GCAGGATAAG
ATCGATGCAC TGGTAGAACG CACAAGAAAT GGCGGCATTG AAATTGTCAA CTATCTGAAA
ACCGGCTCTG CGTTCTATGC ACCGGCAGCA TCTGCAGTAG AAATGATTGA GGGAATCACC
AAGGATCGTA AACGTATTAT CCCTTGCACA ACCCTTCTTG AAGGTCAGTA CGGTATTGAG
AGTGTTTTCT GCGGTGTTCC TGTCAAACTC GGAAAAAATG GTGTTGAGCA GATTCTTGAA
ATCAACCTCA CCGCCTCCGA GCTGGAAGCA CTCCGGAAAT CCGCCGCTCT TGTTGAAGAA
AACTGCAAAA ACCTCGCAAC TCTTCTTGGA TGA
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| Protein sequence | MKITVIGAGN VGATAALRIA EKQLAKEVVL IDIVEGIPQG KALDMYESGA VALFDTTVLG
SNDYKDSADS DIVLITAGLA RKPGMSREDL LKINATIIRD VTTEVMKYSA NPIIIMVSNP
LDVMTFVAWK ASGLPKERVI GMAGVLDTAR YKNFIAEALD VSMQDISAMV LGGHGDSMVP
IVNYTNVAGI PLTELLPQDK IDALVERTRN GGIEIVNYLK TGSAFYAPAA SAVEMIEGIT
KDRKRIIPCT TLLEGQYGIE SVFCGVPVKL GKNGVEQILE INLTASELEA LRKSAALVEE
NCKNLATLLG
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