| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1014 |
|---|
| Symbol | |
|---|
| ID | 6463745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1050580 |
|---|
| End bp | 1051023 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642727265 |
|---|
| Product | putative anti-sigma regulatory factor, serine/threonine protein kinase |
|---|
| Protein accession | YP_002017915 |
|---|
| Protein GI | 194336121 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2172] Anti-sigma regulatory factor (Ser/Thr protein kinase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000121242 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCAA TTGTCACCTT AACATTGCAG GCAGATCTCC GTTATCTGCG TATTGCATCA
GTTACAGCAT GTAATGTGGC TGAAATTTTT GCCAGTATGG CTTGTACATC CGGCAATATC
GCTGAATTCT GTCATGCCTA TGAACTCTCC GTCAGTGAAG CCTTTACGAA CTCGGTACGC
TATGCGGAAC CATCTCGCTC TGAAAAAGAG GTTACGATAT GCTTCAGTTC CGACAACGGT
ACCCTTGCGA TGAGCATTAT CGATACCAAT GCCCAGTTCA ATCCTATAAC CCAGGCTCCG
GACATCAACA GTTATCCCGA GGGTGGGTAT GGACTTTTTT TGATCCACCG CCTTATGGAC
ACCGTTTCCT ACACAAGGAG AGATGGAGAG AATATGCTGA CAATGACAAA ACAGTCGACT
ATAACACAGG CAGCAAATGC ATAA
|
|---|
| Protein sequence | MNPIVTLTLQ ADLRYLRIAS VTACNVAEIF ASMACTSGNI AEFCHAYELS VSEAFTNSVR
YAEPSRSEKE VTICFSSDNG TLAMSIIDTN AQFNPITQAP DINSYPEGGY GLFLIHRLMD
TVSYTRRDGE NMLTMTKQST ITQAANA
|
|---|
| |