Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0989 |
Symbol | |
ID | 6462014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 1023239 |
End bp | 1025455 |
Gene Length | 2217 bp |
Protein Length | 738 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642727240 |
Product | helicase, RecD/TraA family |
Protein accession | YP_002017890 |
Protein GI | 194336096 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATGCGA GTTCCACCCT CTCTCCCGGT GAGAAGCGCA TTACCGGTAT TGTTGAAAAG GTGAGCTTTT TCAGCGAATT GTCGGGGTTC AGCGTTTTGC GCCTCAGTAG AAAAGGGGAG AGTGATGCGG TGACCGTTGT GGGTTATGTT GCTTCCGTCA CAATGGGCCA GCATATTGAG GCGGTTGGTT GCTGGCATAA CGACAAGAGC TGGGGTTTAC AGTTTAAGGC GACGCATCTC GTAGTTGTTC CTCCCGATAC GCTTGAGGGA ATCACAAAAT ATCTCTCCTC CGGCATGGTC AAGGGAGTTG GGCACCGTCT GGCAAAAGTG CTTGTGCGGA CTTATGGAAT GGAGGTTTTT ACGGTTATTG AAGATCATCC TGAACAACTG CTTGGGCTTC CCGGTGTTGG TAAAAAAAAG TTACAGCAGA TTGTTGCTGG CTGGGCGGAG CAGAAGGCGA TTAAGAAAAT CATGCTCTTT CTTCACTCTC ACGGGGTGAG CACGTCGCGA ATTGTCCGGA TTTTTCGTGT TTATGGTGAT GAGGCTGTGG CGGTGGTGAG TGCCAATCCA TACCGCCTCA TCCTTGATAT TCCGGGAATT GGTTTTCGGA CAGCCGACCA GATTGCCCGG AATCTTGGCA TGACTTCTGA CTCTCCGCTG AGGGCGCGTG CAGGTATCAG TTATGCGCTT CAGGAGCTTT CGCTTGAGGG GCATTGCCGG GTTCCGGAGC TAATGCTGCT TGCGGCCTGC AGGAAGCTTC TCGATATTCC TGAGCCGGTG CTTGAAGATG CTCTCCGGCA GGAGCTCTCT ATCGGCACCA TTGTCGCCGT TGAGGAGGAG GGAGAAAAGA GTTATTACCT CGCGTCGCTG TATAAAGCTG AGAGGGGAGT TGCCAAAAGT ATCAGCCGGA TTATGCAGGG TGCGCTTCCC TGGGGAACGC TTGATCCGGC AACGGTTATC CCTGAAGCGG AGAAGCTTTC TGCTCTTGAG CTTTCGGAAT CACAACGTAA CGCGGTTGCT CTTGCGCTCT CAAGCAAGTT CATGGTTATT ACCGGCGGGC CGGGGGTGGG CAAGACGACG ATCATTAATA CCATTTTGAA GATTCTTGAT AGCGGAAAGC TGAAGTTTGT GCTTTGCGCT CCAACGGGCA GGGCGGCCAA ACGGCTTGCT GAATCTACCG GAATGGAGGC GAAAACCATT CACCGGCTGC TTGAATTCGA TCCCTTTGCT CGCGAATTCA GACGGGGAAG TTCTTATCCG CTGGAAGCTG ATCTGGTGAT TGTTGATGAA GCCTCCATGA TTGATGTGGT GTTGATGAAC CGTTTGCTGG CGGCTGTTTC CCGGCGTTCA GCCCTTATTT TTGCGGGTGA CGTTGATCAG CTTCCTCCGG TTGGCCCTGG GTTTGTGCTT GCCGATATGA TCAATTCGGG CGTACTCCCT GTGGTGCGAT TGACAGAAAT TTTTCGTCAG GCTGAGAGCT CCTTGATCAT TGTCAATGCT CACCGGATTA ATCGCGGGGA GTTTGTGGTT TCTCCTCCTG ACTCAACGGC AGGCGCTGAG CTTTCTGACT TTTATGTGGT GCCGTCAGAA AGCACGGCGG ATATTCAGCG CAGGCTTCTG CTGGTGGTGG CTGAACGTAT CCCCGGGCGA TTCGGCATGG ATCCGCTGCA GGATATTCAG GTGCTGACCC CCATGAACAA GGGGCCGCTT GGTACGGTAG CGCTGAATTC GCTGCTGCAG GAACGGCTGA ATCCCGGCGC TGTCAGAAAA ATTGTGCGTT TTGGAACCAC GTATGCCGAG GGGGACAAGG TGATTCAGGT GGTCAACAAC TACGACAAGG AGGTTTTTAA CGGCGATATC GGGCGTATTG CGGTTGTGGA CGAAGAGGAG AGCACGATTC GGGTCCTCTA TGATGGCCGG GAGGTGCTCT ATGAGTCTGG CTCGCTTGAT GAAATTGCTC TTGCCTATGC CATCACGATC CACAAGAGTC AGGGGTCGGA GTACCCGGCG GTGGTGATAC CGCTCTCCAT GCAGCACTAT ACGCTGCTTG AGCGAAACCT GATCTATACA GCCGTGACAC GGGCGAAAAA ACTGGTGATG CTTATCGGAG ATCCGAAAGC AATTTCGATG GCTGTCGGCA ACAAACGTTC TTCGCAAAGG TTGACCGGTC TTGCCGCTCT GCTTGCGGAG GGAACGGACG ATCACCTGCG TCAGTAA
|
Protein sequence | MNASSTLSPG EKRITGIVEK VSFFSELSGF SVLRLSRKGE SDAVTVVGYV ASVTMGQHIE AVGCWHNDKS WGLQFKATHL VVVPPDTLEG ITKYLSSGMV KGVGHRLAKV LVRTYGMEVF TVIEDHPEQL LGLPGVGKKK LQQIVAGWAE QKAIKKIMLF LHSHGVSTSR IVRIFRVYGD EAVAVVSANP YRLILDIPGI GFRTADQIAR NLGMTSDSPL RARAGISYAL QELSLEGHCR VPELMLLAAC RKLLDIPEPV LEDALRQELS IGTIVAVEEE GEKSYYLASL YKAERGVAKS ISRIMQGALP WGTLDPATVI PEAEKLSALE LSESQRNAVA LALSSKFMVI TGGPGVGKTT IINTILKILD SGKLKFVLCA PTGRAAKRLA ESTGMEAKTI HRLLEFDPFA REFRRGSSYP LEADLVIVDE ASMIDVVLMN RLLAAVSRRS ALIFAGDVDQ LPPVGPGFVL ADMINSGVLP VVRLTEIFRQ AESSLIIVNA HRINRGEFVV SPPDSTAGAE LSDFYVVPSE STADIQRRLL LVVAERIPGR FGMDPLQDIQ VLTPMNKGPL GTVALNSLLQ ERLNPGAVRK IVRFGTTYAE GDKVIQVVNN YDKEVFNGDI GRIAVVDEEE STIRVLYDGR EVLYESGSLD EIALAYAITI HKSQGSEYPA VVIPLSMQHY TLLERNLIYT AVTRAKKLVM LIGDPKAISM AVGNKRSSQR LTGLAALLAE GTDDHLRQ
|
| |