Gene Ppha_0989 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0989 
Symbol 
ID6462014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1023239 
End bp1025455 
Gene Length2217 bp 
Protein Length738 aa 
Translation table11 
GC content53% 
IMG OID642727240 
Producthelicase, RecD/TraA family 
Protein accessionYP_002017890 
Protein GI194336096 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCGA GTTCCACCCT CTCTCCCGGT GAGAAGCGCA TTACCGGTAT TGTTGAAAAG 
GTGAGCTTTT TCAGCGAATT GTCGGGGTTC AGCGTTTTGC GCCTCAGTAG AAAAGGGGAG
AGTGATGCGG TGACCGTTGT GGGTTATGTT GCTTCCGTCA CAATGGGCCA GCATATTGAG
GCGGTTGGTT GCTGGCATAA CGACAAGAGC TGGGGTTTAC AGTTTAAGGC GACGCATCTC
GTAGTTGTTC CTCCCGATAC GCTTGAGGGA ATCACAAAAT ATCTCTCCTC CGGCATGGTC
AAGGGAGTTG GGCACCGTCT GGCAAAAGTG CTTGTGCGGA CTTATGGAAT GGAGGTTTTT
ACGGTTATTG AAGATCATCC TGAACAACTG CTTGGGCTTC CCGGTGTTGG TAAAAAAAAG
TTACAGCAGA TTGTTGCTGG CTGGGCGGAG CAGAAGGCGA TTAAGAAAAT CATGCTCTTT
CTTCACTCTC ACGGGGTGAG CACGTCGCGA ATTGTCCGGA TTTTTCGTGT TTATGGTGAT
GAGGCTGTGG CGGTGGTGAG TGCCAATCCA TACCGCCTCA TCCTTGATAT TCCGGGAATT
GGTTTTCGGA CAGCCGACCA GATTGCCCGG AATCTTGGCA TGACTTCTGA CTCTCCGCTG
AGGGCGCGTG CAGGTATCAG TTATGCGCTT CAGGAGCTTT CGCTTGAGGG GCATTGCCGG
GTTCCGGAGC TAATGCTGCT TGCGGCCTGC AGGAAGCTTC TCGATATTCC TGAGCCGGTG
CTTGAAGATG CTCTCCGGCA GGAGCTCTCT ATCGGCACCA TTGTCGCCGT TGAGGAGGAG
GGAGAAAAGA GTTATTACCT CGCGTCGCTG TATAAAGCTG AGAGGGGAGT TGCCAAAAGT
ATCAGCCGGA TTATGCAGGG TGCGCTTCCC TGGGGAACGC TTGATCCGGC AACGGTTATC
CCTGAAGCGG AGAAGCTTTC TGCTCTTGAG CTTTCGGAAT CACAACGTAA CGCGGTTGCT
CTTGCGCTCT CAAGCAAGTT CATGGTTATT ACCGGCGGGC CGGGGGTGGG CAAGACGACG
ATCATTAATA CCATTTTGAA GATTCTTGAT AGCGGAAAGC TGAAGTTTGT GCTTTGCGCT
CCAACGGGCA GGGCGGCCAA ACGGCTTGCT GAATCTACCG GAATGGAGGC GAAAACCATT
CACCGGCTGC TTGAATTCGA TCCCTTTGCT CGCGAATTCA GACGGGGAAG TTCTTATCCG
CTGGAAGCTG ATCTGGTGAT TGTTGATGAA GCCTCCATGA TTGATGTGGT GTTGATGAAC
CGTTTGCTGG CGGCTGTTTC CCGGCGTTCA GCCCTTATTT TTGCGGGTGA CGTTGATCAG
CTTCCTCCGG TTGGCCCTGG GTTTGTGCTT GCCGATATGA TCAATTCGGG CGTACTCCCT
GTGGTGCGAT TGACAGAAAT TTTTCGTCAG GCTGAGAGCT CCTTGATCAT TGTCAATGCT
CACCGGATTA ATCGCGGGGA GTTTGTGGTT TCTCCTCCTG ACTCAACGGC AGGCGCTGAG
CTTTCTGACT TTTATGTGGT GCCGTCAGAA AGCACGGCGG ATATTCAGCG CAGGCTTCTG
CTGGTGGTGG CTGAACGTAT CCCCGGGCGA TTCGGCATGG ATCCGCTGCA GGATATTCAG
GTGCTGACCC CCATGAACAA GGGGCCGCTT GGTACGGTAG CGCTGAATTC GCTGCTGCAG
GAACGGCTGA ATCCCGGCGC TGTCAGAAAA ATTGTGCGTT TTGGAACCAC GTATGCCGAG
GGGGACAAGG TGATTCAGGT GGTCAACAAC TACGACAAGG AGGTTTTTAA CGGCGATATC
GGGCGTATTG CGGTTGTGGA CGAAGAGGAG AGCACGATTC GGGTCCTCTA TGATGGCCGG
GAGGTGCTCT ATGAGTCTGG CTCGCTTGAT GAAATTGCTC TTGCCTATGC CATCACGATC
CACAAGAGTC AGGGGTCGGA GTACCCGGCG GTGGTGATAC CGCTCTCCAT GCAGCACTAT
ACGCTGCTTG AGCGAAACCT GATCTATACA GCCGTGACAC GGGCGAAAAA ACTGGTGATG
CTTATCGGAG ATCCGAAAGC AATTTCGATG GCTGTCGGCA ACAAACGTTC TTCGCAAAGG
TTGACCGGTC TTGCCGCTCT GCTTGCGGAG GGAACGGACG ATCACCTGCG TCAGTAA
 
Protein sequence
MNASSTLSPG EKRITGIVEK VSFFSELSGF SVLRLSRKGE SDAVTVVGYV ASVTMGQHIE 
AVGCWHNDKS WGLQFKATHL VVVPPDTLEG ITKYLSSGMV KGVGHRLAKV LVRTYGMEVF
TVIEDHPEQL LGLPGVGKKK LQQIVAGWAE QKAIKKIMLF LHSHGVSTSR IVRIFRVYGD
EAVAVVSANP YRLILDIPGI GFRTADQIAR NLGMTSDSPL RARAGISYAL QELSLEGHCR
VPELMLLAAC RKLLDIPEPV LEDALRQELS IGTIVAVEEE GEKSYYLASL YKAERGVAKS
ISRIMQGALP WGTLDPATVI PEAEKLSALE LSESQRNAVA LALSSKFMVI TGGPGVGKTT
IINTILKILD SGKLKFVLCA PTGRAAKRLA ESTGMEAKTI HRLLEFDPFA REFRRGSSYP
LEADLVIVDE ASMIDVVLMN RLLAAVSRRS ALIFAGDVDQ LPPVGPGFVL ADMINSGVLP
VVRLTEIFRQ AESSLIIVNA HRINRGEFVV SPPDSTAGAE LSDFYVVPSE STADIQRRLL
LVVAERIPGR FGMDPLQDIQ VLTPMNKGPL GTVALNSLLQ ERLNPGAVRK IVRFGTTYAE
GDKVIQVVNN YDKEVFNGDI GRIAVVDEEE STIRVLYDGR EVLYESGSLD EIALAYAITI
HKSQGSEYPA VVIPLSMQHY TLLERNLIYT AVTRAKKLVM LIGDPKAISM AVGNKRSSQR
LTGLAALLAE GTDDHLRQ