Gene Ppha_0980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0980 
Symbol 
ID6460979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1015521 
End bp1016525 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content51% 
IMG OID642727231 
Productchlorophyll synthesis pathway, BchC 
Protein accessionYP_002017881 
Protein GI194336087 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases 
TIGRFAM ID[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCAA AAGCCATTGT CTTCAGCGGT GTACGCCAGA TTGAACTCTG TGAGGTGACC 
CTGAAATCCC TCTCTTCCAC TGATGTGCTG GTTGAAACAT GGTGGTCGTC AATCAGCACC
GGCACGGAAA AAATGGCCTA TAATGGCCTG ATTCCCTCCT GGCCCTTCAT CTTTCCCTTT
ATTCCGGGAT ATGAAACGGT CGGAAAAATT ATTCAGGCGG GCGACCATGT CAACCAAAGT
CTGATCGGAA AATTCGCCTA TGTAGCCGGC TCATTCGGCT ATGAAGGAGT CAATGCTGCT
TTCGGTGGAG CTTCGGAATA TATCGCCTGC CCGGTCGAGA GCATAACCGT ACTCGACAAC
ATCGAAAATC CAAAGTGCGG CATCGCCCTC CCGCTTGGCG CAACCGCCCT GCACATTGTT
GACCTGGCTC AGGTTGAAAA CAAAAAGGTG CTGGTACTTG GTCAGGGAGC GGTAGGCATT
CTTGCCGCTG AACTGGCAAA GCTTATGGGT GCCAAACTGG TGGCGGCAAC CGAACCCAAC
AAAAAGAGGT TGCAGCTCTC ATCGGCTGAC CTGAAAGTTA ATCCTGAAAC AGAAGATGTT
GCCGCTGCCC TTGCCGGACA TGAGTTCGAC GTTCTGATCG ACAGTACCGG CATCATGAGC
GCCATCGATA CCGGCCTCCG CTTTCTGAAG TTTCAGGGAA CCGTGATCTT TGGAGGCTAT
TACCAGCGAA TCAACATCGA CTACTCACAG GCCTTTCAGA AAGAGCTCTC CTTCATTGCT
GCCAAACAGT GGGCCAAAGG CGATCTTGAG CGGGTACGAG AGCTGATTGC TCAGCAAAAA
CTCAATGCGG CAAGAATTTT CACCCATCAA CATACCGTTG AAGAGGATAT CACGGAAGCC
TATCTGCAGG CATTCACCAA TCCTGACTGC ATGAAAATGA TTCTGCTCTG GAAAACCGGA
ACACAACAGG AGGAGGCAGG ATGCCCAATC ACCGCAAAAT CATAA
 
Protein sequence
MKAKAIVFSG VRQIELCEVT LKSLSSTDVL VETWWSSIST GTEKMAYNGL IPSWPFIFPF 
IPGYETVGKI IQAGDHVNQS LIGKFAYVAG SFGYEGVNAA FGGASEYIAC PVESITVLDN
IENPKCGIAL PLGATALHIV DLAQVENKKV LVLGQGAVGI LAAELAKLMG AKLVAATEPN
KKRLQLSSAD LKVNPETEDV AAALAGHEFD VLIDSTGIMS AIDTGLRFLK FQGTVIFGGY
YQRINIDYSQ AFQKELSFIA AKQWAKGDLE RVRELIAQQK LNAARIFTHQ HTVEEDITEA
YLQAFTNPDC MKMILLWKTG TQQEEAGCPI TAKS