| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0944 |
|---|
| Symbol | |
|---|
| ID | 6460896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 983546 |
|---|
| End bp | 984670 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642727198 |
|---|
| Product | sodium ion-translocating decarboxylase, beta subunit |
|---|
| Protein accession | YP_002017848 |
|---|
| Protein GI | 194336054 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1883] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit |
|---|
| TIGRFAM ID | [TIGR01109] sodium ion-translocating decarboxylase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTTT TTGGGTATTC CGGTTTTGCC AATGCAACTC CGGGACACCT GTTGATGATT
CTTGTCGGAA TGGTATTCAT CTACCTGGCG ATCCGCTATG AATATCAACC GATTCTTCTG
GTTCCGATCG GTTTCGGTAT TCTGATCGGC AATACCCCGT TTATCGAGCA TGGTGGTATG
GCTCTTGGTA TCTATCAGGA TGGCAGCGTC CTGAACTACC TCTACCAGGG AGTACTGAAA
GGAATATTTC CCCCCCTGAT TTTTCTTGGA ATAGGGGCCA TGACCGATTT TTCACCGCTG
ATTTCAAATC CGAAGCTTAT CCTGCTCGGT GCTGCGGCGC AGCTCGGCAT TTTCATGACC
TATCTTGGAG CTATCTCCCT CGGCTTCACC AATCCCGAAT CAGCTTCGAT CGGTATCATC
GGAGGCGCTG ATGGCCCGAC AGCAATTTTT CTCTCTTCCC GGCTTGCTCC GCATCTCGTC
GGTTCCATAG CCATCGCAGC ATACACCTAT ATGGCGCTTG TCCCGCTTAT TCAGCCACCG
ATCATGCGCC TTTTGACGAC CCAAAAAGAG CGCAGAATCA AAATGAAGCC GCCTCGTTCG
GTTACCAAAA TCGAGAAAGT CATGTTCCCT GTATTCGGTC TGCTCCTGAC CGGATTTATT
GCTCCCGGCT CCCTACCGCT GCTCGGTATG CTTTTTCTGG GCAATCTGCT CAAAGAATCA
ATGGTCACAA AACGGCTTGC TGATACGGCA AAAAATGCCA TGATCGACAT CGTAACCATC
ATTCTTGGCG TTACCATCGG AGCGTCAACT CAGGCGACAA CATTTCTGAC CCACAATTCT
GCCCTTATTT TCATCCTTGG CGCAACGGCA TTCATGTTCT CAACGGCTGG CGGAATTCTG
TTTGCAAAAT TCATGAACAT TTTTCTTTCA GAGGGAAACA AAATCAACCC GTTGATCGGC
GCTGCAGGTG TTGCTGCGGT TCCTGAAAGC GCCCGTGTAG CGCAAATGGA GGGGCTGAAG
GCTGACCCTG AAAATCATCT GCTCATGCAT GCCATGGCCC CGAACGTTTC CGGTATCATC
GGTTCAGCCA TTGCCGCTGG CATCATGATG AGCTTCATGG TGTAA
|
|---|
| Protein sequence | MQFFGYSGFA NATPGHLLMI LVGMVFIYLA IRYEYQPILL VPIGFGILIG NTPFIEHGGM
ALGIYQDGSV LNYLYQGVLK GIFPPLIFLG IGAMTDFSPL ISNPKLILLG AAAQLGIFMT
YLGAISLGFT NPESASIGII GGADGPTAIF LSSRLAPHLV GSIAIAAYTY MALVPLIQPP
IMRLLTTQKE RRIKMKPPRS VTKIEKVMFP VFGLLLTGFI APGSLPLLGM LFLGNLLKES
MVTKRLADTA KNAMIDIVTI ILGVTIGAST QATTFLTHNS ALIFILGATA FMFSTAGGIL
FAKFMNIFLS EGNKINPLIG AAGVAAVPES ARVAQMEGLK ADPENHLLMH AMAPNVSGII
GSAIAAGIMM SFMV
|
|---|
| |