| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0939 |
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| Symbol | |
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| ID | 6460903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 973224 |
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| End bp | 974909 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642727193 |
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| Product | Polypeptide-transport-associated domain protein ShlB-type |
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| Protein accession | YP_002017843 |
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| Protein GI | 194336049 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.247088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCAT TATGGAAAAT ACTCTTGTTC GCTTCAACCG TTACGGCAAG CACCCTCTAT
GCAGCAACTC CTCCTGACGC TGGCCAGCTC CTCATGGAGA GTACTCCCCC TCCATCTCTG
ATACCACAAA AGGAAGCTCC GACTTTCCAA AAGCCGGAAA CAGGAAAAGA ACAGGCACCA
GAGGGTGCAT TGGTCAGGGT AACTGGCTTT CATTTTATCG GAAACACCCT TTTTTCAAGC
GAGGAACTTG CACAACTCAT GGCAAACTGC GTTGGCAAAG AGATGACCTT TGCAGGGCTG
ACTGATGCCT CCAGAACAAT CACCAACGCT TACCGCAAAA AAGGATATTT CCTTGCCTCA
CTCTTTTTCC CGCCTCAAAC GGTAACACCA GGCATGTCCA TTACCATTGA AATCATCGAG
GGTGTCCTGG AAAACATAGA GGTTAAAACC ATTCCGATGA ACACCAGAAT ACGAAAATCT
CTCCTTGAAA GCTATGCACG TCAGGTACCC GGTCAACAAC CTCTGGAGGA GGGCTCCCTT
ACCTCTATGG TCATGAAAAC CAATGAACTA CCCAATATCT CCTCCCGAAT TCTTCTCGAA
CCGGGCTCCA GACCCGGTTA CACAAAAGCA ACCCTTGAAG TCAGCGAAGG CAGGCCCATC
AGTTTTTCAT TCGACATTGA CAACTATGGA AACCCGCCAA CCGGAGAAAA TCGTGTCGGG
AGCACCATGG AACTCTATTC TCCACTTCAT CTCGGAGATC AGTTCACCCT TCGACTGCAG
ACATCAACAA CCGGAGATCT GCAAAATATG CTGGCCGGTT ATACCGTGCC GCTAACACCC
TATGGCACAA GGATCGGAGT GAACTATAAC TATCTCACCT ATCGCCTCGG TGGATTATTC
AAAACACTGA ATGCAGAGGG TGACGCCCAT AACCTGACTT TTGCCCTTAC CCAGCCACTC
ATACGCCAGA GAAATCTGCT TATGAATGCA ACCGTTGCTG CGGAAGGAAG AGGGTTAAAC
GACCGAATTG GGAGTACATC AAGAAATCGA CGTCACACCA CATCGTGGCA GGCTGGCATT
ACCGGCATAC AAAAAGACAG GATTCTGGGA GGCGGGTCAA CCTCACTCTC CCTTGGTATT
ATCGGAGGGC GACTGGATAT CAACGATTCG GAAACACTCT CCATTGACCA ATTATCAAGC
GGCTTACACA CCAACGGCAG TTATTCGAAG CTTACCATGG CCCTCGCCCG AAACCAGACC
ATTGCTCACG GATTAGCTCT TTACGCAGGA GCATATGGAC AATGGAGCAA TAAAAACCTG
ACCAGTTCGG AACAACTCTC TCTGGGAGGA CCCTCCGCAG TACGTGCATG GCAACGGGGA
GAATCTTACG GTGACAGGGG TGTGGTTGCA ACCGTCGAAA TGAGCTACCT GATCAGCTCT
ATCGGAGAGC TGCCCGGCAC AGTACAACTC ATTACTTTTA TTGACCATGG ATATGCCCTC
CTTCATGCAA AACCGACTCC GGATACCGAC GATAACAGCC GCAACCTTAC CGGAGCAGGG
ATCGGCATAA AATGGTTCAA TGCCGCCAAC TACAACTTGC AGGCAACCTG CGCATGGAAG
ATCGCCGGAG AGAGCGAACC ATCCGACACC CCGATGATTT TTGTTCAGGC AGTAAAGCGG
TTCTAA
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| Protein sequence | MAALWKILLF ASTVTASTLY AATPPDAGQL LMESTPPPSL IPQKEAPTFQ KPETGKEQAP
EGALVRVTGF HFIGNTLFSS EELAQLMANC VGKEMTFAGL TDASRTITNA YRKKGYFLAS
LFFPPQTVTP GMSITIEIIE GVLENIEVKT IPMNTRIRKS LLESYARQVP GQQPLEEGSL
TSMVMKTNEL PNISSRILLE PGSRPGYTKA TLEVSEGRPI SFSFDIDNYG NPPTGENRVG
STMELYSPLH LGDQFTLRLQ TSTTGDLQNM LAGYTVPLTP YGTRIGVNYN YLTYRLGGLF
KTLNAEGDAH NLTFALTQPL IRQRNLLMNA TVAAEGRGLN DRIGSTSRNR RHTTSWQAGI
TGIQKDRILG GGSTSLSLGI IGGRLDINDS ETLSIDQLSS GLHTNGSYSK LTMALARNQT
IAHGLALYAG AYGQWSNKNL TSSEQLSLGG PSAVRAWQRG ESYGDRGVVA TVEMSYLISS
IGELPGTVQL ITFIDHGYAL LHAKPTPDTD DNSRNLTGAG IGIKWFNAAN YNLQATCAWK
IAGESEPSDT PMIFVQAVKR F
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