Gene Ppha_0933 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0933 
Symbol 
ID6460917 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp969896 
End bp970627 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content48% 
IMG OID642727187 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002017837 
Protein GI194336043 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAAA TCATCATCAT AACCGGCGCT GGCAAAGGAA TCGGCAAAGC CATTGCCCTT 
GAATTTGCAC AAGCTACCGT GAAGCACGAA GGATTTGAGC CCGTCCTGAT CCTTGCATCA
AGAACCATTT CGGATCTGGA GTCAGTTGCG TCCGAATGCC GTTCTTTCGA AGCAGCAGCA
GATATCTTTC CTGTGGACAT TGCCGACCCC GCCCAGATTG AGCATCTTGT CAGCACCACA
CTGGAGCGCT ACGGCACAAT TGATTGTCTG ATCAACAATG CTGGCGTTGG ACGATTCAAG
CCATTCACCG AATTGACAGA AGAGGATTTT GATTATACGA TAGCAACAAA CCTCAAAGGC
ACTTTTTTCC TCACACAGAG AGTTTTTGCC CTGATGGAAA AGAAACGGTC GGGTCATATT
TTCTTTATCA CCTCCATTGC CGCAGAAACA GCTTTCAAAA GTTCTTCGAT CTACTGCATG
TCCAAATTTG GGCAGAAAGG CTTGGTCGAG GCAATACGCT TATATGCTAA AACGTGTAAT
GTCCGTATTA CCAATGTCAT GCCCGGTGCG GTTTATACGC CAATGTGGGG TGAAGTTCCT
GATGCCATGA AGTCCGTCAT GATGAGGCCT GAAGATATTT CCGCTCCCGT CGTCAACGCC
TATTTCATGC CACAGAGAAC GTCGGTGGAA GAGCTGGTGC TCAGACCGGT TTGCGGGGAT
ATCAATGAGT GA
 
Protein sequence
MKQIIIITGA GKGIGKAIAL EFAQATVKHE GFEPVLILAS RTISDLESVA SECRSFEAAA 
DIFPVDIADP AQIEHLVSTT LERYGTIDCL INNAGVGRFK PFTELTEEDF DYTIATNLKG
TFFLTQRVFA LMEKKRSGHI FFITSIAAET AFKSSSIYCM SKFGQKGLVE AIRLYAKTCN
VRITNVMPGA VYTPMWGEVP DAMKSVMMRP EDISAPVVNA YFMPQRTSVE ELVLRPVCGD
INE