| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0803 |
|---|
| Symbol | |
|---|
| ID | 6461261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 839938 |
|---|
| End bp | 841083 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642727056 |
|---|
| Product | Flp pilus assembly protein ATPase CpaE-like protein |
|---|
| Protein accession | YP_002017710 |
|---|
| Protein GI | 194335916 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4963] Flp pilus assembly protein, ATPase CpaE |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA TTACCTACTC TCCCCATCCC TGGGAGGTTC CCGATACACA ACTTGAGCTG
GGTCAACACC AACTGGCCCG ACTGGTGGGT GAGCTTGGGG TTATGGTGCA TCAACTCACA
GCGCAAAAAC CTGACCTCGT ATTTCTTGTG GGCTTTGAAC CCGCCGATCC CCATTACATT
CAAGAGGTAG AGAAACTCTG CCTCGCACTG CCGCATGCCG CAATCGTGGT CCTGCACCCC
CAAACAGAGC CAGAACTTTT GTTATCGCTT ATGCGCGCTG GTGTACGTGA AGTCATTGTC
GACAGTACCT CCGAAACCCT GCAAGAAGTT ATCGAACGCA CTCACCTTCG TGCCAAAGGC
GTTAGTATCA ATCGGTGTCG GGTTTTTGGA TTTGTCTCTT CCAAGGGGGG GGATGGCAGC
TCCTGCATAG CGGCCAACCT GGCTTTTGCA CTCTCTCAAG AGCCCGACTT CCGCGTGCTG
GCGGTCGATG TCTCTTTACC CTTTGGTGAC CTTGACATGT ACCTCACCGG AGAAAACCAC
CCTCAGGATT TAGCCGATAT TTCCGGTGAA TGTGACCGGC TCGACCAGTC GCTGCTCGAC
AGCATGGTGC AGCACCTCAG CCCTACACTC GATCTCATCT CCTCGCCCGC AACCTTCGAA
AAAATTGTTC ATATCGAACC CGAGCGCGTG AGCGAACTCA TTCACATTGC CACAAACTTT
TACGACTATA TTCTGGTTGA TTTTGGTTCA TCCCTTGATC AGGTTGGCAT CTGGGTTTTG
GAGCAGCTTG ACGAACTCTG CATCGTATTC ACCCCATCGC TGCCATCGTT GCGCCGGGCG
GGCCAAATAC TCAAACTCTG GAAAGAATTT GAAAAACCCA TGTCGTGCAC CGAAATCATC
CTCAACCGTG CTGACACAAG TGTTCCTATC ACCGGTACCG AAATCGAAAA AGTGATCGGC
AGGCCAATTA ACAAACGCTT TCCCTCCGAC GCTGAAGCCG TGCAGGAATC CCTCTTGATT
GGCCAGCCCT TATTGCAAGT GGCGCCCAAA TCCAAACTTT CCAAAACCAT CGTCGACTGG
GCCGAGCACA TCACAGGCAG CAGTCATCAT AAACGCTCAC TATGGGAACG CTTAAAGATC
AAATAG
|
|---|
| Protein sequence | MNIITYSPHP WEVPDTQLEL GQHQLARLVG ELGVMVHQLT AQKPDLVFLV GFEPADPHYI
QEVEKLCLAL PHAAIVVLHP QTEPELLLSL MRAGVREVIV DSTSETLQEV IERTHLRAKG
VSINRCRVFG FVSSKGGDGS SCIAANLAFA LSQEPDFRVL AVDVSLPFGD LDMYLTGENH
PQDLADISGE CDRLDQSLLD SMVQHLSPTL DLISSPATFE KIVHIEPERV SELIHIATNF
YDYILVDFGS SLDQVGIWVL EQLDELCIVF TPSLPSLRRA GQILKLWKEF EKPMSCTEII
LNRADTSVPI TGTEIEKVIG RPINKRFPSD AEAVQESLLI GQPLLQVAPK SKLSKTIVDW
AEHITGSSHH KRSLWERLKI K
|
|---|
| |