| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0641 |
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| Symbol | |
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| ID | 6461651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 655353 |
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| End bp | 658637 |
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| Gene Length | 3285 bp |
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| Protein Length | 1094 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642726902 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002017557 |
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| Protein GI | 194335763 |
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| COG category | [H] Coenzyme transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.230386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGATA TCAGAATGAG TTGCAAGCCT GAGCATCTTG TTGTCAAGCG GGAAGTGTCA
AAAGAGGATA CCGCTTTTGT GTTGCGTTCA GCGTTCTTGC TGCATCAACA GGGCCGTTTG
GAGGAGGCTG AGGCTCTTTA TCGTGAGATC GTGCAATCAG ATCCGGAACA TTTTGAGGCG
TTGCGGCTTT TGGCGATCAT TGCTGTGCAA AAAAAGCGGT TCGAAGACTC TCTTGTGTTG
TTTGATCATG CCCTCAAAAT CAATCCCCGC CATGCAGCTA CACTCAACAA TCAGGGTGTG
GTCTACGAGG AGTTGCATCG TTTTGATGAA GCATTATGCA GTTATGAGCA TGCGCTTGCC
GTGAAACCCG ATTATGCCGA GGCCTCCTTG AATCGTGGTG TGATGTTACA GGAGCTTGGG
CGGTTTGACG AGGCTGTGTT GAGTTACGAT CATGCGCTGA CCAATGATGC GGACAATGCC
CGTATCTGGT TTCATCGCGG TAATGTTCTT CAGGACTTGA AACGTTACGG GGAGGCTGTT
TTCAGTTTTG AAAAAGCTCT TGCCATCAAT CCGGATTATG CAATAGCGTA TGCAAATCTT
GGTAATGTGT TACAGGATCT GAAGCGCTAT GAAGAGGCTG TGCTGAGTTA TGACAGGGCG
ATTGCCGTCA ATCCGGACTC TGTAAGGGCT TACGTTAACC GGGGCATAGC GTTACAGGAG
CTGAAACGTT ACGAAGAGGC TGTTTTCAGT TTTGAAAAAG CCTGTGCTAT CAATCCTGAC
TATGCAATAG CGTATGCAAA TCTTGGTAAT GTGTTGCAGT ATTTGAAGCG CTACGGGGAG
GCTGTACTCA GTTATGACAA GGCGATAGCT CTCAAACCGG ACTATGCAGA GGCACACTCC
GATCGCGGCG TTGCATTACA GGGACTGCAA CTCTATGAAG AGGCGTTGTT GAGTTATGAC
AGAGCTCTGC TTGTCAGGCC GGACTATGCG GAGGCTTGCT ATAATCGTGG TGTGGTGTTA
CAGAAGTTGA AGCGGCACGT AGAGGCATTG GCGAGTTATG AGCAGGCTTT GGCTCTCAAG
CCGGATTATG ATTTTTTGTC TGGAATGTGC CTGAATATAA AAATGCAGAT GTGTGACTGG
AGAGATTTCG AGTGTCAGCT CTCTCGACTT TTTCAGAAAA TAGAGCGCTC TGAAAAGGTT
GCAGTGCCAT TTTCTTTTCT CTCCATAAGT GATTCGTTGC TCTTGCAGAA AAAGGTGGCT
ATGATCTCTG TTGGGGAAAG CTGTTTTTCT CCCCAGGTGC CCTCAGCAAT TTCCAAACGT
TCTCGGCATG AAAAAATCCG TATTGGATAC TATTCGGCGG ATTTTCATGA TCATGCTACG
GCATATTTGA TGGCAGAGTT GTTTGAACGG CATGATCGAT CTCAGTTTGA GCTTTTTGCC
TTTTCTTTCG GGCCTGACAG GCAAGATAAA ATGAGAAAAA GGGTTGCCGC TGCTTTTGAT
CATTTTTTTG ATGTGCGGAC TCGATCTGAT GCAGAGATTG TCCTCTTCTC AAGGGATTTG
GAAATTGATA TTGCCATTGA TCTCAAAGGC TTTACACAAG GTTTTCGGAG AGGGATTTTT
GCCCTGCGGG CAGCGCCGAT ACAGGTCAGC TATCTGGGTT ACCCTGGCAC CATGGGGGTC
GGGTATATTG ATTATCTGAT TGCGGACAGT ATGCTGATAC CGGAAGGCTC CCGAAAGTAC
TATACAGAAA AAATCGTCTA TCTGCCCGAC AGTTATCAGG TCAACGATAC AAAGCGCGTC
ATTGCGGAGA AACTCTTTAC CCGCAAAGAG TGCGGTTTGC CCGAGCAAGG ATTCGTGTTT
GCATGTTTTA ACAATAACAA TAAAATTACC CCGGCAACTT TTGATGGCTG GATGCGTATT
CTTGGACAGG TAGAGGGGAG TGTGCTTTGG CTTCTTGAGG ATAATGTGGC AGCAGCGGAT
AATTTGCGGA ATGAAGCGAT GCAGAGGGGT GTTGATGCCG CCAGGCTTGT ATTTGCAAAA
CGGATGCCGC TTGCTGAACA TCTCGCAAGG CAGCGGTTGG GGGATCTGTT CCTTGACACC
TTCCCTTGCA ATGCTCACAC GACGGCAAGC GATGCCTTGT GGGCAGGTTT GCCACTCTTG
ACGCTGCTTG GTGAATCGTT TGCTGGCAGG GTGGCGGCAA GTTTGCTGAA CGCGATGCAG
TTGCCGGAGC TCATAACGTC CAAGCAGGAG GAGTATGAGG CTCTTGCGAT TGAACTTGCT
TCCAATCCGG CAAAACTGGG CAATATCCGC CGTAAACTGG AGCAGAATCG GCTTGCAACA
CCGCTGTTTG ATACCAAGCG TTTTACCCGG CATATAGAAC AAGCTTATTG TATGATGTAC
GAACGCTATC AGCAGGAGCT ACCGCCCGAT CACCTGTTTT CGCTGCCATC AGCGCAAGGC
AGTACAGGAA CCATATCGCA GTTACAGCAA GAGTATGCAT GCTGTCCCTT ATGTGGATGC
AAGAACTCCT TGTATGGCCG TGCAGACTGC AGCCGTCACA CTCTGTGGCA TGAACCGCTT
CCTCGTATAT TGGAGTGGAT GCGTTGTCCA GGTTGTCACC ATGTTTATAC CCGCCACTTC
TGGACTCAGG CTGGTATTGA TGAACTTTTT CGGAATGCTC AACAAAACCA GCTTGCAGGT
TTCGGCGCCA GTCAGGACGC AAAGCGAGCG AACTGGGTAC CAGTCGTGGA CAGGGTGCTC
AATCTGCTTG GAGGATATCG TAGTATCATG GATAATGGTT CCCATCCAAC ATGGGTAGAC
GTTGGATGTG GTGATGGTGC GCTTGTTATG ACTGCGGGTG ATTTTGGCTT TACCGCATTG
GGGCTTGACG CTCGCAGTGA GGCGGTACGC CGTATTATTG AGCTTGGTTT CAAGGCGGAG
GAGGGGGATT TCATGCAATG TACTTTTGAA CGTAAGCTCG ATGTGCTTTC GATGATGGAT
GTGCTTGAAC ATATGCCCTA TCCAGGGCTT GCTCTGGGCA AGGCGGCAGA GCTTGTCAGG
CCGGGTGGTG TTCTTGTTAT CAGTCTGCCT GATCTCTCGT GTTCAAGCTG GAGGATGATG
GATGCGGCTA AATGCAATCC ATATTGGATG GAGATTGAAC ATTATCATAA TTTCAGTCGA
GAGAGGTTGA TCGCTTTGCT TGGTGAAAGA GGATTTGACG TTGCTGATTT TGGGATTCCA
AACCGTTACA AGGCACAGAT GGAGCTTTAT GCTGTTCGGA AATGA
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| Protein sequence | MNDIRMSCKP EHLVVKREVS KEDTAFVLRS AFLLHQQGRL EEAEALYREI VQSDPEHFEA
LRLLAIIAVQ KKRFEDSLVL FDHALKINPR HAATLNNQGV VYEELHRFDE ALCSYEHALA
VKPDYAEASL NRGVMLQELG RFDEAVLSYD HALTNDADNA RIWFHRGNVL QDLKRYGEAV
FSFEKALAIN PDYAIAYANL GNVLQDLKRY EEAVLSYDRA IAVNPDSVRA YVNRGIALQE
LKRYEEAVFS FEKACAINPD YAIAYANLGN VLQYLKRYGE AVLSYDKAIA LKPDYAEAHS
DRGVALQGLQ LYEEALLSYD RALLVRPDYA EACYNRGVVL QKLKRHVEAL ASYEQALALK
PDYDFLSGMC LNIKMQMCDW RDFECQLSRL FQKIERSEKV AVPFSFLSIS DSLLLQKKVA
MISVGESCFS PQVPSAISKR SRHEKIRIGY YSADFHDHAT AYLMAELFER HDRSQFELFA
FSFGPDRQDK MRKRVAAAFD HFFDVRTRSD AEIVLFSRDL EIDIAIDLKG FTQGFRRGIF
ALRAAPIQVS YLGYPGTMGV GYIDYLIADS MLIPEGSRKY YTEKIVYLPD SYQVNDTKRV
IAEKLFTRKE CGLPEQGFVF ACFNNNNKIT PATFDGWMRI LGQVEGSVLW LLEDNVAAAD
NLRNEAMQRG VDAARLVFAK RMPLAEHLAR QRLGDLFLDT FPCNAHTTAS DALWAGLPLL
TLLGESFAGR VAASLLNAMQ LPELITSKQE EYEALAIELA SNPAKLGNIR RKLEQNRLAT
PLFDTKRFTR HIEQAYCMMY ERYQQELPPD HLFSLPSAQG STGTISQLQQ EYACCPLCGC
KNSLYGRADC SRHTLWHEPL PRILEWMRCP GCHHVYTRHF WTQAGIDELF RNAQQNQLAG
FGASQDAKRA NWVPVVDRVL NLLGGYRSIM DNGSHPTWVD VGCGDGALVM TAGDFGFTAL
GLDARSEAVR RIIELGFKAE EGDFMQCTFE RKLDVLSMMD VLEHMPYPGL ALGKAAELVR
PGGVLVISLP DLSCSSWRMM DAAKCNPYWM EIEHYHNFSR ERLIALLGER GFDVADFGIP
NRYKAQMELY AVRK
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