| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0633 |
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| Symbol | |
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| ID | 6461683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 632142 |
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| End bp | 633596 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642726894 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_002017549 |
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| Protein GI | 194335755 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00458641 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAACT TAAAAACCTC TATATCCAAG GTTATGAAAC AGACTACCAA TAAGAACCTG
AAAACCCTTG CAGTGGCAGT TTTGCTCCTC TGTCTTGGGT CACCGCAAAC TGTAGAGGCC
AAGGCAGTAA CGGCAAGTGA AGCGGTTACC GCTGCTTTGA ATACCAATCC GGAGGTGCAG
GCGAAGTTTC ATGCTTTCCG GGATGTGTAC GAAGAGCAGG GTGTGGCTAA CGGGGGCTAC
ATGCCGAAGC TTGATTTTAG CGCTGGCGTG GGTCGGCACT GGCTCAAGTC GGAGAGTAAC
GGGGATGAAA ATTACTGGCG GAAGGGTCTC CGGCTTGAAC TCTCCCAGAT GCTTTTTGAC
GGGTTTTATA CCCGAAACCA GGTTCATCGG TTGAAACACT CGGGTCAGGC CCGATATCTG
GAGTTTATGG ACTCTATGGA AAATATTGGT CTTGAAAGTT TCAGGGCGTA TATGGATGTG
CTCCGTTATC GTGAGATGGT CAATCTTTCG AGAAGAAATT ATGAGTATCA TCAGGAGATT
TACAAGCAGA TCAGCAGTCG GGTTCGTGCG GGGGTTGCAG CAGGGGTTGA TATGGAGCAG
ATCACGGCCC GTCTTTCGCT GGCACAGTCG AACCTGGTGA CCGAATTGAG CAACCAGCAT
GATGTAAGCG CTCGCTACCA GCGTTATATC GGAGAGTTGC CGGAAGAGAA TCTGGCGCCT
GCAGTGCTGC CTGATAAAGG GATACCTGCT ACGAAAGTTG CGACGCTGAA AGAGGCCTAT
CAGTACAATT TCGGCTTTCT TGCCACCCTT TCTGATATCC GGGCTGCTCA ATATGCCGTC
AATGTACAGA AAGCAAAATA TTATCCGCGT ATCGACTTCA AGGCTCGCCA TGACCGGTCA
TGGAATCTGG ATGGTGTGGA TGGCCGGAGG GATGAGTCGG TTGCTGAACT TGTATTGAAC
TACAATATCA TCAATGGGGG CGCTGATCAG GCGGCATTGC ATCAGTACCG TGAAAAAATG
TATCGTTCGG TTGATCTGAA AGACAAGGCC GCTCGTGATT TGCGTCAGAC CATAGAGATC
GCTTATAATG AACGGGAGAT GATAAAAGAG CAGTTACAGT ATTTTGATCG GCACTATAAA
AGCATGGAGA AGGTAAGAGA GGCCTATCAT GAGCAGTTTA ATATCGGAAA ACGTACATTG
CTTGACCTGC TTGATACCGA GAATGAATAT TATCAGGCAC GTCGTGCTTT TTATAACGGT
TTTTTTGACC TCACGATAGC TAATGCAAGG ACGTTGGCGG GACTGGGCAG GCTGCTCACC
ACAATGGGTG TTGTTCGCGG AGAGATGCCG AGTTTGAAGG ATATCAATAT TCCTATGCCT
GAGGTCAAGG ATGAGGATTT GCCGCCATTT GACGTTCCTG TGCGTGGCAA ACTGGATCTT
CCTGAGGTCA AGTGA
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| Protein sequence | MDNLKTSISK VMKQTTNKNL KTLAVAVLLL CLGSPQTVEA KAVTASEAVT AALNTNPEVQ
AKFHAFRDVY EEQGVANGGY MPKLDFSAGV GRHWLKSESN GDENYWRKGL RLELSQMLFD
GFYTRNQVHR LKHSGQARYL EFMDSMENIG LESFRAYMDV LRYREMVNLS RRNYEYHQEI
YKQISSRVRA GVAAGVDMEQ ITARLSLAQS NLVTELSNQH DVSARYQRYI GELPEENLAP
AVLPDKGIPA TKVATLKEAY QYNFGFLATL SDIRAAQYAV NVQKAKYYPR IDFKARHDRS
WNLDGVDGRR DESVAELVLN YNIINGGADQ AALHQYREKM YRSVDLKDKA ARDLRQTIEI
AYNEREMIKE QLQYFDRHYK SMEKVREAYH EQFNIGKRTL LDLLDTENEY YQARRAFYNG
FFDLTIANAR TLAGLGRLLT TMGVVRGEMP SLKDINIPMP EVKDEDLPPF DVPVRGKLDL
PEVK
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