| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0558 |
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| Symbol | |
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| ID | 6461847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 545187 |
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| End bp | 546209 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642726833 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_002017488 |
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| Protein GI | 194335694 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.201229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAAAG ATAAAAAGCT TTTTATAACA GGTGGCACAG GTACTTTTGG CAATGCTGTT
TTAAGGCGTT TCCTTCAGAC TGATATAGCG GAAATTCGAG TTTTCAGTAG GGACGAAAAG
AAGCAAGATG ATATGCGCAA GCATTATGCT CATACCAAGC TTAAGTTTTA CATTGGGGAT
GTGCGCAATG CGGATAGTGT AAGGGATGCG ATGGAGGGTG TTGACTTTAT TTTTCATGCG
GCGGCTCTGA AACAGGTTCC TTCCTGTGAG TTTTTTCCTG TTGAGGCGCT TCGTACCAAT
GCGATGGGTA CACACAATGT GCTTACACAG GCTACTGCTG TTGGTGTGAA GCGGGTGGTA
GTGCTGAGTA CTGATAAAGC AGTCTATCCG ATTAACGCGA TGGGTATCTC AAAGGCTATG
ATGGAGAAAA TTGCCGTTGC CCAGTCGCGT GTTTCTGGGA GTCGGACGGT TATTAACGTG
ACGCGTTATG GTAATGTGAT GGCAAGTAGG GGTTCTGTTA TTCCGCTGTT TCTGAAGCAT
ATCCAGGAGG GTCGGCCCAT GACCATCACT GATCCCAAAA TGACTCGTTT CATGATGACG
ATTGATGATG CAGTTGATCT TGTGCTTTAT GCCTTCACTC ATGGTCAGCC AGGTGATACT
TTTGTGCAGA AGGCACCAAG TGCTACTATT GAAGTGTTGG CGTTGGCACT GAAGAAACTG
ATGAAGAGCG ATGTCTCAGT TAGCATCATC GGTACACGCC ATGGGGAAAA ACTTTATGAA
TCGCTTCTGA CCCGTGAAGA GCTTACAGTT GCTCAGGATT TGGGCGGGTA TTACCGAGTT
CCTGCTGATA ATCGTGATTT GAACTATGCT GCTTTTTTCA GTGAAGGGCG TGAAGAGGTG
TCACTGAAGG AGGATTATAA TTCACATAAC ACTGCAAGAG TTGATGTTGA TGGCATGTGT
GAGTTGCTTT TGAAGCTTGA TTGCGTGAAT GCTGCGATGA GAGGTGAACG GGTTGAGGTT
TAA
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| Protein sequence | MFKDKKLFIT GGTGTFGNAV LRRFLQTDIA EIRVFSRDEK KQDDMRKHYA HTKLKFYIGD
VRNADSVRDA MEGVDFIFHA AALKQVPSCE FFPVEALRTN AMGTHNVLTQ ATAVGVKRVV
VLSTDKAVYP INAMGISKAM MEKIAVAQSR VSGSRTVINV TRYGNVMASR GSVIPLFLKH
IQEGRPMTIT DPKMTRFMMT IDDAVDLVLY AFTHGQPGDT FVQKAPSATI EVLALALKKL
MKSDVSVSII GTRHGEKLYE SLLTREELTV AQDLGGYYRV PADNRDLNYA AFFSEGREEV
SLKEDYNSHN TARVDVDGMC ELLLKLDCVN AAMRGERVEV
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