| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0427 |
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| Symbol | rho |
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| ID | 6462252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 410565 |
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| End bp | 411854 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642726712 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_002017370 |
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| Protein GI | 194335576 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000196448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAACA ATTCGGTTTG TAAAGGTCTG GACATCAATA TGCTCCAGAA AAAGAAGGTT
TCTGAACTGC ATGTTTTAGC CAAAGAGCTT GGAGTGATGG CTGCCGGTTT GCGAAAGGAG
GAGCTGATTT TCAAGATTAT TGAGGCGCAG TCACAGAAAA ATACCGACTC CGAAAGCGGT
AACGTCATGG TCAACACCGG CGTTCTGCAG GTCATCCCGG AAGGTTACGG CTTTTTACGG
TCAGCCAATT ACAACTACCT TTCCTCTCCT GACGATATTT ATGTATCCCC GTCCCAGATC
AAGCGATTTA ACATGCGTAC CGGTGATACC GTCTCCGGAC AAGTAAGGGC TCCAAAGGAG
GGAGAACGCT TTTTTGCCTT GCTGAAGATC AACACCATTG ATGGTAACGA CCCTGAAATT
ACACGAGAGC GCCCCTACTT CGAAAATCTG ACCCCCCTTT TTCCGCGAGA GCGCCTCAAG
CTCGAAACCA AGCAGTCGGA AGCATGTGGC CGCATCATGG ATATTTTTAC CCCTATCGGT
AAAGGGCAGA GAGGCCTGAT TGTGGCGCAG CCGAAAACCG GCAAAACGAT GTTGTTGCAG
ATGATTGCCA ATGCCATTAT CAAAAATCAT CCAGAGGTCT ACCTTATTGT GCTGCTTATC
GACGAACGCC CTGAAGAGGT GACCGACATG GCCCGGAGTG TTCCGGCAGA AGTGGTAAGC
TCCACCTTTG ATGAGGATCC CGAACGTCAC GTTCTTGTAG CCGATATGGT GCTTGAAAAG
GCGAAGCGGC TTGTGGAGGT TGGTCGTGAT GTGGTGGTGC TGCTCGATTC CATTACACGG
CTTGCAAGGG CTCACAATAC CATCATTCCC CATTCAGGAA AAATCCTGTC AGGTGGTATC
GATGCCAATG CCCTTACCAA ACCGAAACGC TTCTTTGGTG CAGCCCGTAA TATCGAGGAA
GGCGGAAGCC TGACCATTAT TGCCACCGCG CTTATTGATA CCGGTTCCCG CATGGATGAT
GTTATTTTCG AAGAGTTCAA AGGAACAGGC AATATGGAGC TTCTGCTCGA CCGTCGGCTT
TCTGAGCGTC GTATTTTCCC ATCCATTGAT ATTCTTCGCT CCAGTACCCG TAAGGAAGAG
CTGCTCTTTA CACAGGAAGA GCTTTCAAGG ACATGGTTGC TCAGAAAATA CCTTGCCGAC
AAGAACCCTA TCGAGTGCAT GGAGTTCATG CGTGAGAAAA TGGCTGACAC CAAGGATAAC
AAGGACTTTT TCAAATACAT GAATGCCTGA
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| Protein sequence | MSNNSVCKGL DINMLQKKKV SELHVLAKEL GVMAAGLRKE ELIFKIIEAQ SQKNTDSESG
NVMVNTGVLQ VIPEGYGFLR SANYNYLSSP DDIYVSPSQI KRFNMRTGDT VSGQVRAPKE
GERFFALLKI NTIDGNDPEI TRERPYFENL TPLFPRERLK LETKQSEACG RIMDIFTPIG
KGQRGLIVAQ PKTGKTMLLQ MIANAIIKNH PEVYLIVLLI DERPEEVTDM ARSVPAEVVS
STFDEDPERH VLVADMVLEK AKRLVEVGRD VVVLLDSITR LARAHNTIIP HSGKILSGGI
DANALTKPKR FFGAARNIEE GGSLTIIATA LIDTGSRMDD VIFEEFKGTG NMELLLDRRL
SERRIFPSID ILRSSTRKEE LLFTQEELSR TWLLRKYLAD KNPIECMEFM REKMADTKDN
KDFFKYMNA
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