Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0416 |
Symbol | |
ID | 6462286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 398658 |
End bp | 399899 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642726702 |
Product | RNA-directed DNA polymerase |
Protein accession | YP_002017360 |
Protein GI | 194335566 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3344] Retron-type reverse transcriptase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAAGC CATATGAAAT TTCCAAAGAA CTTGTCTTGA AAGCGTATCA ACAAGTGAAA TCTAATGGAG GTGCAGCCGG TGTAGACCGA GAATCGTTAC AGGCATTTGA AACAAAACTG AAAGACAACC TGTACAAGGT ATGGAACAGG CTCAGTTCCG GCAGTTATTT TCCGCCGCCG GTAAGGGGTG TGGGCATTCC GAAGAAATCT GGAGGAGTGC GTATGCTTGG TGTTCCAACC GTGGCGGACA GGGTAGCTCA AAGCGTTGTA AAAATGGTGC TTGAGCCCAT ATTGGAACCA GTTTTTCATG AAGATTCGTA TGGTTATCGT CCGGGGCGTT CAGCTCATGA CGCTATAGCT GTAGTGAGGA AGAGAAATTG GGAATATGAT TGGGTTGTAG AATTCGACAT CAAGGGGCTG TTTGATAACA TCGATCATGA GTTGTTAATG CGCGCTCTTC GGAAACATTG CCAAACTCCT TGGGTTTTTC TTTACGTAGA GCGGTGGCTA AAGGCACCGA TGGAGACCCC GGAAGGTGAG CTGATAGAAC GGACAAAAGG AACGCCCCAA GGGGGAGTGG TGAGTCCACT GTTGGCGAAC CTGTTTCTGC ACTATGCGTT TGACCGGTGG GTGAGCGAAA ATCTACCCGG TGTGCCGTTT TGTCGGTACT CCGATGATGG CGTTCTTCAC TGTAAAAGCA AGATACAGGC AGAGCTGGTA AAGCGAAAGA TTGGTGAGCG TTTTCGTGAG TGCGGATTAG AGTTACACCC TGATAAGACG CAAATAGTGT ATTGCAGGGA TAGCAATCGC AAGGACGAGC ATCCAGTAAA TCAGTTTACA TTTCTTGGTT TTACCTTCTG TTCACGGGAA GCCAAGAAGA AAGATGGAAC TTACTTTATT GGGTTTCTGC CGGGAGTAAG CCGGGATGCA CTGCGACACA TGCGGCAGAC GATCAGAAGG TGGAAGCTAC AGCTCAAAAA CAGCTTGGAA CTTGCGGATT TATCAGCACA GTTCAACCCG ATACTGAGGG GATGGAAGAA CTACTACACG CGATTTTACG GTTCAGCAAT GGCTCCGGTT TGGCAACACA TGAACTATTA CTTGGCACAC TGGATGATGA GAAAGTACAA GCAATTGAGT GGGCACAAAA CCAGAGCAAG CAGAAAACTG CGACTTCTGG CGGAAGAGAA TCCAAACTTA TTTGCGCATT GGAAAGCGGG GTATACCTCG ATGGCTAGAT GA
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Protein sequence | MTKPYEISKE LVLKAYQQVK SNGGAAGVDR ESLQAFETKL KDNLYKVWNR LSSGSYFPPP VRGVGIPKKS GGVRMLGVPT VADRVAQSVV KMVLEPILEP VFHEDSYGYR PGRSAHDAIA VVRKRNWEYD WVVEFDIKGL FDNIDHELLM RALRKHCQTP WVFLYVERWL KAPMETPEGE LIERTKGTPQ GGVVSPLLAN LFLHYAFDRW VSENLPGVPF CRYSDDGVLH CKSKIQAELV KRKIGERFRE CGLELHPDKT QIVYCRDSNR KDEHPVNQFT FLGFTFCSRE AKKKDGTYFI GFLPGVSRDA LRHMRQTIRR WKLQLKNSLE LADLSAQFNP ILRGWKNYYT RFYGSAMAPV WQHMNYYLAH WMMRKYKQLS GHKTRASRKL RLLAEENPNL FAHWKAGYTS MAR
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