Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0378 |
Symbol | |
ID | 6462383 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 361120 |
End bp | 362841 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642726666 |
Product | type I secretion system ATPase |
Protein accession | YP_002017324 |
Protein GI | 194335530 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0307649 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAACAAA ATAAAGAAAA ATCTCCCTTG CGTGAGGCTC TTGCTTCGCT CATTCCCTTT CTTAAACGGG CCTTTTATTT CAGTCTCGTT GTTAATGTGC TGGTGCTTGC TCCGAGTGCC TACATGATGG AGGTGTATGA TCGTGTCGTG AACAGTCGCA GTCATACAAC ATTGCTGATG CTTACGCTTC TGGTAGTAGG CGCCTATCTG CTGCTTGAGG CACTGGAATG GGTACGCCGC CAGGTGATGC ACGATGCTGG TATGAAGCTC GACAAGGGAT TGCGTGAACA AGTGTTTGGC GCCGTTTTTA TGGCAAGGAT TCAGAACATT CCTGGAGTGG GTGCCCAGGC GCTGCGTGAT CTCAAGACCC TTCGTGAATT TTTGCCCTCT CCCGGTTTTC TTGCCTTTAT TGATACTCCT CTTGCCTTGC TGGTGCTGGT AATTATTTTT CTCATGGCGC CAGCTCTCGG CTGGTTTGCT GTGGCTGGTG CTCTGGTGCA GTTTATGATT GGAGTGATTA ATGAACGCCG TATCCGCGAA CCGCTTTTGG CGGCTAACCG AAATGCGATG CGCGCTCAGA CCTATGCGGA TGGGGTAATT CGTAACGCCC AGGTTATAGA ATCGATGGGA ATGCTTGGTC ATATCCATAA ACGATGGATG GAGCGTCAAC AAGAGTTTCT CTGGCAACAG GCAGAAGCAT CCGACCATGC GGGAACAAAT TCAGCCCTTT CGAAGCTGGT GCAAAGTCTT TTGACCTCTC TTTTGCTTGG CATGGGTTGC TGGCTGACAC TGAAAGGGGA GTTGCATGGA TCCGGTATGA TTGTTGCATC CATTCTTGGT GGAAGGGTGC TCGCACCGCT TGTTCAGGTT ATCGGTAGCT GGCGTCAGGT GGAAGGCGCC CTTGAGTCGT TCAGCCGTCT GGAGGGCTTG CTGAAGGAGT TTCCCCTTCA GGAAAAGGGG ATGTCACTGC CGGAACCGAC TGGTTTTCTT GCAGTTGAGG GCGTTATAGC AGGTGCTCCC AGAAGCCCGG TGCAGATTCT CAAGGGGGTA AGTTTCAGAG TTGCCCCGGG AGGGTCGCTG GCGATTGTCG GTCCATCGGC TTCAGGCAAG ACCACCCTTG CAAGGCTTCT GGTTGGTGTG TGGCCGGCCA TGCAGGGTAA GGTGCGCCTT GACGGAAATG ATATCTATCA GTGGGACAAG GAGGAACTTG GGCAGTATAT TGGCTATTTA CCCCAGAATG TTGAGTTGTT CGAAGGTACC ATTGCTGAAA ATGTTGCTCG TTTCGGGGAT CCTGATGATG AAAAAGTGCA TGAAGCATGT CGTATGGTGG GGCTTTCGGA TTTTATTGAA ACGCTTCCGA AGAGGTTCGA CACGCAGATA GGCGATGATG GTTCGTTTCT TTCCGGCGGT GAGCGGCAGC GCGTTGCTCT GGCCAGAGCA GTATACGGAA TGCCGAAGTT TGTGGTGCTT GATGAACCGA ATGCAAGTCT TGACGAAGCT GGAGATGCAG CGTTGCTCAA TGCGGTAAAA TTGTTGAGGG CACGGGGCAC GACGGTGATT GTCATTACGC ATCGCTTAAA TATTCTGGGG GCAATAGAGC ATATGCTCGT ACTGGTTGAC GGGCAGGTAC AGCGCTTCGG TACTTGTCAG GAGGTAATGG AGGCTCTTCA GTCGCAATCA GCGGCCCAGC AGCAGCCTCT GAAACCAAAG CCTCAGGGCT AA
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Protein sequence | MKQNKEKSPL REALASLIPF LKRAFYFSLV VNVLVLAPSA YMMEVYDRVV NSRSHTTLLM LTLLVVGAYL LLEALEWVRR QVMHDAGMKL DKGLREQVFG AVFMARIQNI PGVGAQALRD LKTLREFLPS PGFLAFIDTP LALLVLVIIF LMAPALGWFA VAGALVQFMI GVINERRIRE PLLAANRNAM RAQTYADGVI RNAQVIESMG MLGHIHKRWM ERQQEFLWQQ AEASDHAGTN SALSKLVQSL LTSLLLGMGC WLTLKGELHG SGMIVASILG GRVLAPLVQV IGSWRQVEGA LESFSRLEGL LKEFPLQEKG MSLPEPTGFL AVEGVIAGAP RSPVQILKGV SFRVAPGGSL AIVGPSASGK TTLARLLVGV WPAMQGKVRL DGNDIYQWDK EELGQYIGYL PQNVELFEGT IAENVARFGD PDDEKVHEAC RMVGLSDFIE TLPKRFDTQI GDDGSFLSGG ERQRVALARA VYGMPKFVVL DEPNASLDEA GDAALLNAVK LLRARGTTVI VITHRLNILG AIEHMLVLVD GQVQRFGTCQ EVMEALQSQS AAQQQPLKPK PQG
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