| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0378 |
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| Symbol | |
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| ID | 6462383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 361120 |
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| End bp | 362841 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642726666 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_002017324 |
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| Protein GI | 194335530 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0307649 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACAAA ATAAAGAAAA ATCTCCCTTG CGTGAGGCTC TTGCTTCGCT CATTCCCTTT
CTTAAACGGG CCTTTTATTT CAGTCTCGTT GTTAATGTGC TGGTGCTTGC TCCGAGTGCC
TACATGATGG AGGTGTATGA TCGTGTCGTG AACAGTCGCA GTCATACAAC ATTGCTGATG
CTTACGCTTC TGGTAGTAGG CGCCTATCTG CTGCTTGAGG CACTGGAATG GGTACGCCGC
CAGGTGATGC ACGATGCTGG TATGAAGCTC GACAAGGGAT TGCGTGAACA AGTGTTTGGC
GCCGTTTTTA TGGCAAGGAT TCAGAACATT CCTGGAGTGG GTGCCCAGGC GCTGCGTGAT
CTCAAGACCC TTCGTGAATT TTTGCCCTCT CCCGGTTTTC TTGCCTTTAT TGATACTCCT
CTTGCCTTGC TGGTGCTGGT AATTATTTTT CTCATGGCGC CAGCTCTCGG CTGGTTTGCT
GTGGCTGGTG CTCTGGTGCA GTTTATGATT GGAGTGATTA ATGAACGCCG TATCCGCGAA
CCGCTTTTGG CGGCTAACCG AAATGCGATG CGCGCTCAGA CCTATGCGGA TGGGGTAATT
CGTAACGCCC AGGTTATAGA ATCGATGGGA ATGCTTGGTC ATATCCATAA ACGATGGATG
GAGCGTCAAC AAGAGTTTCT CTGGCAACAG GCAGAAGCAT CCGACCATGC GGGAACAAAT
TCAGCCCTTT CGAAGCTGGT GCAAAGTCTT TTGACCTCTC TTTTGCTTGG CATGGGTTGC
TGGCTGACAC TGAAAGGGGA GTTGCATGGA TCCGGTATGA TTGTTGCATC CATTCTTGGT
GGAAGGGTGC TCGCACCGCT TGTTCAGGTT ATCGGTAGCT GGCGTCAGGT GGAAGGCGCC
CTTGAGTCGT TCAGCCGTCT GGAGGGCTTG CTGAAGGAGT TTCCCCTTCA GGAAAAGGGG
ATGTCACTGC CGGAACCGAC TGGTTTTCTT GCAGTTGAGG GCGTTATAGC AGGTGCTCCC
AGAAGCCCGG TGCAGATTCT CAAGGGGGTA AGTTTCAGAG TTGCCCCGGG AGGGTCGCTG
GCGATTGTCG GTCCATCGGC TTCAGGCAAG ACCACCCTTG CAAGGCTTCT GGTTGGTGTG
TGGCCGGCCA TGCAGGGTAA GGTGCGCCTT GACGGAAATG ATATCTATCA GTGGGACAAG
GAGGAACTTG GGCAGTATAT TGGCTATTTA CCCCAGAATG TTGAGTTGTT CGAAGGTACC
ATTGCTGAAA ATGTTGCTCG TTTCGGGGAT CCTGATGATG AAAAAGTGCA TGAAGCATGT
CGTATGGTGG GGCTTTCGGA TTTTATTGAA ACGCTTCCGA AGAGGTTCGA CACGCAGATA
GGCGATGATG GTTCGTTTCT TTCCGGCGGT GAGCGGCAGC GCGTTGCTCT GGCCAGAGCA
GTATACGGAA TGCCGAAGTT TGTGGTGCTT GATGAACCGA ATGCAAGTCT TGACGAAGCT
GGAGATGCAG CGTTGCTCAA TGCGGTAAAA TTGTTGAGGG CACGGGGCAC GACGGTGATT
GTCATTACGC ATCGCTTAAA TATTCTGGGG GCAATAGAGC ATATGCTCGT ACTGGTTGAC
GGGCAGGTAC AGCGCTTCGG TACTTGTCAG GAGGTAATGG AGGCTCTTCA GTCGCAATCA
GCGGCCCAGC AGCAGCCTCT GAAACCAAAG CCTCAGGGCT AA
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| Protein sequence | MKQNKEKSPL REALASLIPF LKRAFYFSLV VNVLVLAPSA YMMEVYDRVV NSRSHTTLLM
LTLLVVGAYL LLEALEWVRR QVMHDAGMKL DKGLREQVFG AVFMARIQNI PGVGAQALRD
LKTLREFLPS PGFLAFIDTP LALLVLVIIF LMAPALGWFA VAGALVQFMI GVINERRIRE
PLLAANRNAM RAQTYADGVI RNAQVIESMG MLGHIHKRWM ERQQEFLWQQ AEASDHAGTN
SALSKLVQSL LTSLLLGMGC WLTLKGELHG SGMIVASILG GRVLAPLVQV IGSWRQVEGA
LESFSRLEGL LKEFPLQEKG MSLPEPTGFL AVEGVIAGAP RSPVQILKGV SFRVAPGGSL
AIVGPSASGK TTLARLLVGV WPAMQGKVRL DGNDIYQWDK EELGQYIGYL PQNVELFEGT
IAENVARFGD PDDEKVHEAC RMVGLSDFIE TLPKRFDTQI GDDGSFLSGG ERQRVALARA
VYGMPKFVVL DEPNASLDEA GDAALLNAVK LLRARGTTVI VITHRLNILG AIEHMLVLVD
GQVQRFGTCQ EVMEALQSQS AAQQQPLKPK PQG
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