Gene Ppha_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0316 
Symbol 
ID6462527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand+ 
Start bp301456 
End bp302439 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content45% 
IMG OID642726608 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_002017266 
Protein GI194335472 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.00157956 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATACC AGATGCAGAT GCCTGCAAAA ATAGAGGTTG ACGAATCTTC CCATACGGAT 
TGTTTCGGCA GGTTCATTGC CCAGCCGCTC GAGCGCGGTT ATGGCGTGAC CCTTGGAAAC 
GTTATGAGAA GGGTTCTTCT GGCCTCACTA CCGGGAACTG CAATAACAGG GATCAAGATA 
GATGGTGTTT TTCATGAGTT TGCTGCCATT GATGGTGTTC GTGAGGATGT GCCCGAAATT 
GTTCTGAACC TTAAAAAAGT ACGTTTCAAG TCTACCTGTA AAAGAAACTG CAAGACCTCG 
TTGACCCTTG TCGGCCCTAT GGATTTTACG GCTGGTGATA TTATTGCACA GGAGGGTGAG 
TTCGAGGTGT TGAACAAGGA TATGCATGTT GCGACCATAA ATGCCGGTGC GACAGTCAAG 
ATCGATCTCT ATATCGGAAG AGGACGTGGT TATATGCCTG CCGAGGAAAA CAGGCCAGAA 
GGGATGCCAA TAGGTTATAT TGCCGTTGAC GCTATTTATA CACCGATCAG AAATGTGAAG 
TTTACTGTAG AAAATACGCG CGTCGGGCAG CGGACCGATT ATGAAAAAAT GATTCTTGAT 
GTTGAGACAG ATGGTTCTGT AAGTCCTGAT GACTCCATCA GTCTTGCAGG TAAAATCATC 
ACTGATCATG TTACCTTTTT TGCCAATTTC TCACCTACAG AAGAGGAGTT TACCGAAGAG 
GAATTCAAAC AGCAGGATGA CGAGTTTGAG ACGATGCGCA GGCTCTTTCA CACCAAAATC 
GAAGATCTCG ATCTTTCTGT TCGTTCGCAC AACTGCCTCA GACTTGCAGA AATCGATACC 
ATTGGTGAAC TCGTCTCGCA TAAGGAGGAC GAATTGCTTA ATTACAAGAA CTTTGGCAAG 
AAGTCACTCA CGGAACTCAA GGAACAGCTT GAAAAGTTTG ACCTGAAGTT TGGTATGGAT 
ATTACCAAGT ATCAGATGAA ATGA
 
Protein sequence
MIYQMQMPAK IEVDESSHTD CFGRFIAQPL ERGYGVTLGN VMRRVLLASL PGTAITGIKI 
DGVFHEFAAI DGVREDVPEI VLNLKKVRFK STCKRNCKTS LTLVGPMDFT AGDIIAQEGE 
FEVLNKDMHV ATINAGATVK IDLYIGRGRG YMPAEENRPE GMPIGYIAVD AIYTPIRNVK 
FTVENTRVGQ RTDYEKMILD VETDGSVSPD DSISLAGKII TDHVTFFANF SPTEEEFTEE 
EFKQQDDEFE TMRRLFHTKI EDLDLSVRSH NCLRLAEIDT IGELVSHKED ELLNYKNFGK 
KSLTELKEQL EKFDLKFGMD ITKYQMK