Gene Ppha_0304 details

Gene Information

• Locus tag: Ppha_0304
• Symbol: rplF
• ID: 6462019
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelodictyon phaeoclathratiforme BU-1
• Kingdom: Bacteria
• Replicon accession: NC_011060
• Strand: +
• Start bp: 294995
• End bp: 295534
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 642726596
• Product: 50S ribosomal protein L6
• Protein accession: YP_002017254
• Protein GI: 194335460
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.361286
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAGAA TAGGAAAAAT GCCCATACCC CTGAGCAATC AGGCGAAGAT AGAGATCAAA 
GATTCAAACA TCAGGGTATC CGGTCCTAAA GGCACTCTTG AACAGAGGCT GACCGATCAG 
GTAACCGTAT CGGAAGAAAA CGGTTTAGTT ACCGTATTGA GAATCGATGA CAGTAAAAAG 
GCTAAAGCAC AGCATGGTCT TTACCGTATG CTTATCAGCA ATATGGTTGA TGGTGTAACA 
AAAGGTTTTA CCAGAAAACT CGAAATTGCT GGCGTCGGGT ATCGTGCTGA GCTGAAAAAT 
GATCTGCTTG CCCTGACACT TGGCTATTCG CATATGATCT ATTTCAAGGC TCCGGATGAG 
ATTAAAATTG AAGTGCCTGA TCAGGTCACT GTTCTTGTAA GTGGCATTGA CAAGGCTCTT 
GTTGGTCAGG TTGCCGCCAA GATCCGTTCA TTCAGAAAGC CGGAACCTTA TCGTGGAAAA 
GGCATTAAAT ATGAAGGTGA AGTCATCCGC CGCAAGGAAG GTAAGGCTGC AGGCAAATAA 

 

Protein sequence

MSRIGKMPIP LSNQAKIEIK DSNIRVSGPK GTLEQRLTDQ VTVSEENGLV TVLRIDDSKK 
AKAQHGLYRM LISNMVDGVT KGFTRKLEIA GVGYRAELKN DLLALTLGYS HMIYFKAPDE 
IKIEVPDQVT VLVSGIDKAL VGQVAAKIRS FRKPEPYRGK GIKYEGEVIR RKEGKAAGK