| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0238 |
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| Symbol | |
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| ID | 6460882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 229159 |
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| End bp | 231522 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642726532 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_002017191 |
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| Protein GI | 194335397 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.463685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGGTT ATTTGCAGTA TTGGCGGGGA GGAAAGTCCT GGCGCTCTGG GCGCTTTGCT
GCTGCTTCGG CGGGGTTGAT TTTTTTTATC ATCATCGCCC TTACAGGCAC GATTGGTGCC
ACTCTTTCCC TTGCAGCTCT CAAGAGTGAT GCCAGTATGC GCACCCTTGT TGAGGCCAGG
AAAGCTTTGG AACAGGCGGA AAAGAGTGCC GATCCTGATC AGATTGAGGT TGCTTTGAGT
CTGAACAATC TTGCTGGTCA GTGCTTCTTT CTGAATCAAT ATGCAACAGC CGACACCCTT
TTCAGGCGGG CACTGGCAAT CCGGGAGAAA TCCCTTGGTT CTGCTCACCT CGATGTGGCA
ACGAGTTTGA ACAACCTGGC GGAGTTATAT AAAATTCAGG CCCGATACGC AGAGGCAGAG
CCTCTCTGCA TTCGTGCACT TGCTATCCGT GAGGGCTCTT TTGGGCCGGA TCATCCCTCT
ATTGCAATGA GTCTGAATGC TCTTGCAGGA CTTTATTTTA TTCAGGGACG GTATCTGGAA
TCCGAGCTAC TCTTCAAGCG TGCATTAGCA ATGCATGACA GGCTTCTTGG TCCAGACCAT
CCTGATCATC CCGAGGTTGT CATGGGCTTG AACAACCTTG CAACTCTTTG TCAGTTTCAG
GGCAGATATA CTGAAGCCGA GCCATACTAT CGACGTGCAC TGGCAATCAG TGAAAAGCTT
GCTCGGCATG ATCAACCGGA AGTTGCGACC TCTTTGAACA ACTTTGCAGA GTTCTGTAAG
ATTCTTGGCC GTTATGCAGA AGCTGAGCCT CTTTTGACCC GTGCGCTCTC AATTCGGGAG
AAAATATTTG GTACTGCGCA TCCCGATGTT GCGACGAGTC TTAACAATCT TGCCGGCCTT
TACTTTGCAC AAGGCCGGTT TAGAGAGGCA GCTCCATTAT ACAAGCGATC ACTGGCAATT
CGGGAGAAAA TTTTTGGTTC CGCTCACCCT GATGTGGCAA TAAGCCTGAA TAATCTTGCT
GAGCTCTACA AAACGCAGGG CAAATATGCT GAAGCGGCTC CACTCTTTCT GCAAGCCCTT
GCAATAAAGG AAAAGTTTTT TTGTTCCGCT CACATCCAGA CAGTAGTGGG TCTGAATGCT
CTTGCCGGTT TTTACTCGTT TCAGGGCCGG TATGCAGATG CTGAAGCGCT TATGAAGAGG
GCGCTTGCCA TCCGCGATAA GATTGTCGGT TCGGTTCAAC CCGACAGAGC AACCTGCATG
AATAACCTTG CCGGACTCTA TTCCGCACAA GGCCGATACA GAGCTGCTGA GCTGCTGTAC
AGTCGTTCGT TTGCATTGCG GGTGGAGTCT GTCGGGCCTG AGCATGTCAT GGTTGCCGAA
AGTCTGAATA ACCAGGCTGA ACTCTGTCGC TCGTTAGGCC AGTATGCAGA TGCTGCTCCA
CTCTATAATC GTGCACTTGC CATTCAGGAG AAGGTTTTTG GTTTAGATCA CCCCTGTGTT
GCAAGAACTC TGAACAACAT AGGGAAGCTC TATTCAATAC AAAATAAATA TGCAGATGCT
GAGCAACTCT ACCGACGTGC ACTTGTCATC CGGGAAAAGT TTTTTGGCCC TGATCACCCC
TATGTCGCAA GAAGTCTGAA TAATCTCGCA TCTCTTTATT CTGCTGATGG TCGGTATGCT
GAAGCGCATC GCCTTTACGT CCGTGCGCTT GCTATTCGTG AAGAGGCGCT TGGTTTTGAT
CATCCGGATG TTGCCTTGAG TCTGAATAAT CTTGCCGCTC TTTATCAGGC TCAAGGCCGT
TGTGCATTGG CCGAGCCACT CTACACTCGT GCACTCGATA TTCAGGAGAA GGCTTTCGGG
GTCGAGCACC CGGATGTTGC TACAACACTG AACAATCTTG GGAGGCTCTA TTATGCCGGT
AACCGCAATG TCGAGTCAGA AGCGTTGTAC CGGCGAGCAC TTGCCATTCA GGAAAAAGTC
TTCGGGGCAT GGCACCCTGA TGTGGCCACC ACCCTGAATA ATCTTGCATT ACTGTACAAA
TTTGAGGGTA GATACGCTGA TGCCAAGCCA CTCTTTACCC GCTCCATTGC GATTCGCGAA
AAGTGTTTCG GTCAGGATAA CCAAAATGTA GCTGTGAGTT TACAGAACCT TGCCGAACTT
TATACTGCTG AAGGTCGCTA TGCTGAGGCT GAGCCATTTA CCAGACGTTC ATTGGCAATT
GTAGAGAAGA GTCTTGGTCC TGTTGATGCC AATGTTGCTA CGCTCCTTGA ACATTTGGCG
ATCATCTGCC GGAAAACCGG GCAGGGAGTT GTTGCTGATG AGGCGCAAAA GCGTGCAGCA
GTGATAAGGA GTCTGCATCA CTGA
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| Protein sequence | MTGYLQYWRG GKSWRSGRFA AASAGLIFFI IIALTGTIGA TLSLAALKSD ASMRTLVEAR
KALEQAEKSA DPDQIEVALS LNNLAGQCFF LNQYATADTL FRRALAIREK SLGSAHLDVA
TSLNNLAELY KIQARYAEAE PLCIRALAIR EGSFGPDHPS IAMSLNALAG LYFIQGRYLE
SELLFKRALA MHDRLLGPDH PDHPEVVMGL NNLATLCQFQ GRYTEAEPYY RRALAISEKL
ARHDQPEVAT SLNNFAEFCK ILGRYAEAEP LLTRALSIRE KIFGTAHPDV ATSLNNLAGL
YFAQGRFREA APLYKRSLAI REKIFGSAHP DVAISLNNLA ELYKTQGKYA EAAPLFLQAL
AIKEKFFCSA HIQTVVGLNA LAGFYSFQGR YADAEALMKR ALAIRDKIVG SVQPDRATCM
NNLAGLYSAQ GRYRAAELLY SRSFALRVES VGPEHVMVAE SLNNQAELCR SLGQYADAAP
LYNRALAIQE KVFGLDHPCV ARTLNNIGKL YSIQNKYADA EQLYRRALVI REKFFGPDHP
YVARSLNNLA SLYSADGRYA EAHRLYVRAL AIREEALGFD HPDVALSLNN LAALYQAQGR
CALAEPLYTR ALDIQEKAFG VEHPDVATTL NNLGRLYYAG NRNVESEALY RRALAIQEKV
FGAWHPDVAT TLNNLALLYK FEGRYADAKP LFTRSIAIRE KCFGQDNQNV AVSLQNLAEL
YTAEGRYAEA EPFTRRSLAI VEKSLGPVDA NVATLLEHLA IICRKTGQGV VADEAQKRAA
VIRSLHH
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