Gene Ppha_0223 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0223 
Symbol 
ID6461790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand+ 
Start bp215746 
End bp216654 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content48% 
IMG OID642726518 
Productprotein of unknown function DUF58 
Protein accessionYP_002017177 
Protein GI194335383 
COG category[R] General function prediction only 
COG ID[COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0556027 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACGG AGAAGAGTGT GGAAAAGAGT GAAGAGCATC TGAAGGAACT TCAGAATATT 
ATAAGACGGG TTGAAATCCG CTCAAAGCGG ATGGCCAGCG AACTGTTCAG CGGTGAATAT 
CACTCCTCGT TCAAGGGAAA AGGTATTGAG TTCAGTAATG TGCGTGAGTA CCAGTATGGC 
GATGATGTCC GCTCTATTGA CTGGAATACC TCTGCCCGAA AACATGAATT ATATGTCAAA 
CTCTTTACCG AGGAGCGCGA ACGGAGTTTA TTGCTTGTTG TTGACGCATC GGCATCAATG 
CTTTTCGGCA GCCGGGAGCA CAGTAAAAAG GAGGTTGCTC TTGAAGTGAG TGCCGTCCTT 
GCGTTCAGCG CCCTTCAGAA CAATGATAAG GTTGGGCTTC TTGTCTTTAC TGATCGTGTT 
GAAACCTATA TTCCACCTCG CAAGGGGCGC CATCATGTGC TGGTGATTCT CGAAGAACTT 
ATTCGGATGA AGCCAGGGAA CTCTGCCACC AACATCAACG CAGCCCTCTC TTTTGTTCGT 
TATACCCGCC AGCGGCAGGA AATCATTTTT CTTTTGACGG ATCTGGTGGA CAGCGACTAT 
GAAAAAGGTA TGAAGCTTCT TAATACCCGT CACGATTTTA TTCTTGTGCA TATCAGTGAC 
CCGCTCGATA AGGCCCTTCC CCTTAGCAGT CTGCTCGATA TCGAAGAGCC TGAAACCGGT 
ATGCGACTTA CGCTTGATGG CGGAAGCCGT CGCGAAATAG AGCATTATCG GAGTGTGCAG 
TGCAAACATT ATGAGGAACT TCGTCACCGC CTTCGGCGCA TGCGTATTGA TTCGCTGTTT 
CTTGATACCG ATCGTTCGTT TATTGGTGAT CTCAACTCAT TTTTTCAGCA CCGTGAACGC 
AAGGTTTGA
 
Protein sequence
MSTEKSVEKS EEHLKELQNI IRRVEIRSKR MASELFSGEY HSSFKGKGIE FSNVREYQYG 
DDVRSIDWNT SARKHELYVK LFTEERERSL LLVVDASASM LFGSREHSKK EVALEVSAVL 
AFSALQNNDK VGLLVFTDRV ETYIPPRKGR HHVLVILEEL IRMKPGNSAT NINAALSFVR 
YTRQRQEIIF LLTDLVDSDY EKGMKLLNTR HDFILVHISD PLDKALPLSS LLDIEEPETG 
MRLTLDGGSR REIEHYRSVQ CKHYEELRHR LRRMRIDSLF LDTDRSFIGD LNSFFQHRER 
KV