| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0148 |
|---|
| Symbol | |
|---|
| ID | 6462401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 156658 |
|---|
| End bp | 157110 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642726451 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_002017111 |
|---|
| Protein GI | 194335317 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00197515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAG GTTTGAATTT TAAAGTGGGA GAGGCAATGC TGAAAGATGC AATGGGTGGA
TACCGGGGAA CGGCGACGGA GATCAGCAGG GTAATTGCCG AGCATCCGGA AAGGGCAGAA
GCGTACTATG ATCGGGGCAA TGCCCGCAGC AGTTGCAATG ATTTTGATGG CGCCATAGCC
GATTTCAGCA TGGCATTACA GATAGGCCTT CGTTTCCGTG AAGCTATTAC GGCTTATGGT
AATCGCGGTA TGGCAAGGGT AAAAAGTGGA GATATGGATG GCGCAATTCA GGATTTCAGC
GCAATCATCG AGCGAAAGCC CGCCAACAAA CGGCTTTTGT CTACTGCGTA TAAGAACAGG
GCGTTGGTAA AAGAAAAAAA AGGTGATAGC GAAGGCGCCG CAGGAGACAG GACGATGGCT
CTCTTGTTAT CATCGGATAG AAACAAACAA TAA
|
|---|
| Protein sequence | MEKGLNFKVG EAMLKDAMGG YRGTATEISR VIAEHPERAE AYYDRGNARS SCNDFDGAIA
DFSMALQIGL RFREAITAYG NRGMARVKSG DMDGAIQDFS AIIERKPANK RLLSTAYKNR
ALVKEKKGDS EGAAGDRTMA LLLSSDRNKQ
|
|---|
| |