| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0122 |
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| Symbol | |
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| ID | 6461859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 135687 |
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| End bp | 138848 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642726432 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_002017092 |
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| Protein GI | 194335298 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.62255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGGAT TTTTTATAGA GCGACCCGTC TTTGCCTGGG TGATCTCCAT CTGCATCATG
CTCGGAGGAA TCATCGCCAT CAATACCCTG CCGGTTGAGC AATATCCGCG CATCGCGGCG
CCGACCATCA ACGTCAGCGC CACCTATCCC GGCGCATCTG CCGAAGCGGT TGAAAACAGC
GTGACGCAGG TTATTGAACA GGCTCTCACC GGTATCGACC ATCTCCGCTA CTTCAGCGCC
GGGAGCGATT CGAACGGCAA CGTCACCATC ACGGTGACCT TCGAGCCCGA AGCTAACCCC
GATATTGCCC AGGTGCAGGT GCAGAACAAG TTGCAGTCGA TCATGTCGAA CCTTCCCCAA
CAGGTGCAGC AGCAGGGCAT CAAGGTGACC AAGGGAGATA CCGGCTTTCT GATGGTCGTG
GGCGTCTATT CGGACGATCC CCGGATCGAT GAATATGCGA TGAACGATTT CATCAACTCG
AAACTCCTCG ATCCGCTGAG TCGCGTACCC GGCGTCGGGA ACATCCAGGT ATTCGGGCAG
CCCTACTCGA TGCGGATCTG GCTTGATCCC CACCGGATGG CGAGCTTCAA CCTCACCACC
ACCGAGGTAC AGGCAGCTAT CACGGCACAG AATGCCGATG TCTCTGCCGG GCAGTTGGGA
GGTACACCCT CGGTTCCGGG CCAGCAACTG AATGCCACCA TTACAGCGCA GTCGCGCCTG
AAGAGCGTCG GGGATTTCGA AAAGATCATG CTGAAGGTCA ATAGCGACGG CTCGCAGATC
CGCCTCAGGG ATGTGGCCCG CGTCGAACTC GGTGTGCAGA ACTACGACAT GACCACGCGC
TTCAACGGCA AACCGGCTGC CGGCATGGCC ATCACCCTGG CGACCGGGGC AAATGCCCTG
AACACCGCCA CTCTTGTCAA AGCGAAAATG AGCGCCCTGA AGCCGCTTCT CCCGCCGGGT
GTGCAGATCG TCTACCCATT CGACACGACA CCATTCGTCA AGACATCGAT CGAAGGGGTT
GTTCATACCC TGATTGTGGC AGTCATCCTC GTCTTCCTGG TCATGTTCCT GTTTCTCCAG
AACTTCCGGG CCACACTGGT ACCCACCATC GCGGTTCCGG TTGTGCTGCT CGGTACCTTC
GGGGTGATGT CGATGTTCGG CTTCTCCATC AACACCCTCA GCATGTTCGC CATGGTCCTC
GCCATCGGAT TGCTTGTCGA TGACGCCATT GTCGTGGTTG AGAACGTCGA ACGCATCATG
GAAGAGGAGC GACTCTCCCC GCTGGAGGCG ACCAGGAAAT CGATGAAGCA AATATCGAGC
GCACTGATCG GTATCGCCCT TGTGCTCTCG GCCGTCTTCG TGCCGATGGC CTTCTTCAAA
GGCTCCACGG GGACCATCTA CCGCCAGTTC TCGATCACCA TCGTCTCGGC GATGCTGCTC
TCGGTGCTGG TTGCGCTGAT CCTGACACCG GCTCTCTGCG CCAGCCTCCT CAAGCCGGTC
AGAGCGGATG GCCATCTCTA CGGTGCTGGC CCTCTCGGGC GCTTTTTCGC CTGGTTCAAC
GGCATGTTCA ACCATAACCG GGAACGCTAT GTCAACGGCG CCCGTGTTAT GACGGAACGG
GTCAAGCGCT CGCTGCTCGC TTTTATGCTG ATCGTGGTGC TGCTTGGGAT CGTTTTGACG
CGCATCCCGA CCTCGTTTCT GCCGGACGAA GATCAAGGCT TCCTCTTCGT CCAGCTTTCC
ACCCCATCCG GAGCGACCAA GGAGCGGACA CTCGAAAGCG TGAAGAGGAT GGAACGCTAC
CTCCTCAATC AGGAAAAAGA GAGCATCGAA AGCATCTTCA GCGTCACCGG TTTCAGTTTC
GCGGGTCAGG GCCAGAACTC GGCCATGGGT TTCGTCCAGC TCAGGGACTG GTCGAAACGC
AAGAACAAGG GTCAGGATGT TGCCTCGATC GCCGGAAGAA CCATGGGCGC CCTGTCGAGC
GTGAAGGATG CCATGATCTT TGCATTTTAC CCGCCAGCCG TCATGGAGCT CGGCAACGCC
TCGGGTTTCG ACCTTCAGCT TTTAGACCGG ACCGGCAAGG GTCATGAGGC TCTCATGGCC
GCCCGGAACC AACTGCTCGG AATGGCTGCG AAGAACCCCT CCCTGAGCGG CGTGCGTCCC
AATGGCCTTG AAGATGTGCC ACAATTCAAA ATCGATATCG ACCACGAACA GGCAAGCGCC
TTCGGGGTAT CGATCGCCGA CATCAACTCG ACGCTGCAGA CCGCCTGGGG TTCATCTTAT
GTGAACGATT TCGTGCATGA GGGGCGCATC AAGAAGGTGT TCATGCAGGG AGACGCGCCG
TACCGCATGA ACCCGGGGGA CGTCAACATC TGGCACGTCC GGAACTCCAG TGGTGACATG
GTTCCCTTCT CATCGTTTTC CTCGGGGCGG TGGAGCTTCG GCTCACCCAA GCTCGAACGG
TTTAACGGCA TCTCGTCGGT CAATATCCAG GGAGCCCCGG CGCCAGGCGT AAGCTCGGGC
GATGCCATGG CCATCATGGC AAACCTGGCG GAGAAACTCC CTGAAGGTTT CGGCGTCGAA
TGGACCGGCC TCTCCTACGA AGAGCGTGCT GCAGGCCAGC AAACGCTGCT GCTCTACACG
CTCTCCCTGC TTTTCGTCTT TCTTTGTCTG GCAGCTCTTT ACGAAAGCTG GAGCGTGCCG
ATTGCCGTCA TGCTGGTAGT CCCGCTCGGG GTCCTCGGCA CCGTTCTGGC AACATTTCTC
TCAGGCCTTT CAAACGACGT CTTCTTCAAG GTCGGCCTGT TGACAACTGT TGGCCTGACG
GCGAAAAATG CCATCCTCAT CGTGGAGTTC GCCAAAACGC TCTACGAAAG CGGAATGAGC
CTGCAGGAGG CGGTACTCTC TGCAGCAAGT CAGCGACTTC GACCGATCAT CATGACCTCC
ATGGCATTCA TCCTTGGTGT CACGCCGCTC GCCTTCTCCT CCGGAGCAGG ATCGGCAAGC
CAGCACGCCA TCGGCATCGG CGTAATCGGA GGCATGTTGT CCGGTACGGT ACTGACGATC
TTCTTTGTGC CGCTCTTCTT CATCCTCGTA CAATCCCGGT TTGCCCGAAA GAGGGTAACC
GACACCGCAG TAACCCAAAA CAAACAAGGG ATCGAACCAT GA
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| Protein sequence | MSGFFIERPV FAWVISICIM LGGIIAINTL PVEQYPRIAA PTINVSATYP GASAEAVENS
VTQVIEQALT GIDHLRYFSA GSDSNGNVTI TVTFEPEANP DIAQVQVQNK LQSIMSNLPQ
QVQQQGIKVT KGDTGFLMVV GVYSDDPRID EYAMNDFINS KLLDPLSRVP GVGNIQVFGQ
PYSMRIWLDP HRMASFNLTT TEVQAAITAQ NADVSAGQLG GTPSVPGQQL NATITAQSRL
KSVGDFEKIM LKVNSDGSQI RLRDVARVEL GVQNYDMTTR FNGKPAAGMA ITLATGANAL
NTATLVKAKM SALKPLLPPG VQIVYPFDTT PFVKTSIEGV VHTLIVAVIL VFLVMFLFLQ
NFRATLVPTI AVPVVLLGTF GVMSMFGFSI NTLSMFAMVL AIGLLVDDAI VVVENVERIM
EEERLSPLEA TRKSMKQISS ALIGIALVLS AVFVPMAFFK GSTGTIYRQF SITIVSAMLL
SVLVALILTP ALCASLLKPV RADGHLYGAG PLGRFFAWFN GMFNHNRERY VNGARVMTER
VKRSLLAFML IVVLLGIVLT RIPTSFLPDE DQGFLFVQLS TPSGATKERT LESVKRMERY
LLNQEKESIE SIFSVTGFSF AGQGQNSAMG FVQLRDWSKR KNKGQDVASI AGRTMGALSS
VKDAMIFAFY PPAVMELGNA SGFDLQLLDR TGKGHEALMA ARNQLLGMAA KNPSLSGVRP
NGLEDVPQFK IDIDHEQASA FGVSIADINS TLQTAWGSSY VNDFVHEGRI KKVFMQGDAP
YRMNPGDVNI WHVRNSSGDM VPFSSFSSGR WSFGSPKLER FNGISSVNIQ GAPAPGVSSG
DAMAIMANLA EKLPEGFGVE WTGLSYEERA AGQQTLLLYT LSLLFVFLCL AALYESWSVP
IAVMLVVPLG VLGTVLATFL SGLSNDVFFK VGLLTTVGLT AKNAILIVEF AKTLYESGMS
LQEAVLSAAS QRLRPIIMTS MAFILGVTPL AFSSGAGSAS QHAIGIGVIG GMLSGTVLTI
FFVPLFFILV QSRFARKRVT DTAVTQNKQG IEP
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