| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0067 |
|---|
| Symbol | |
|---|
| ID | 6462692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 66499 |
|---|
| End bp | 68598 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642726369 |
|---|
| Product | transcriptional regulator, NifA subfamily, Fis Family |
|---|
| Protein accession | YP_002017040 |
|---|
| Protein GI | 194335246 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACT CATCCGTCCA TGAGGCCAGC ATGCTGATGC AGTACATCAG CGATGCCGTC
GGCTCCATCC GTGATCCCCA GGATCTTTTT CGAACGGTCA TCGACAAGCT TCGCCTTGTC
TTCGAGTTTG ATTCCGCCGC CATTCTCACC TTTGACAAAG AGTGCCGGTA CAGTAATCTC
TTTTTTGAAA TGCTCCGCTT TCAGCTTCCT GAAACCATTG ATCGTAACAA GAGGCTGATT
GCAGGCTCCT GGATTGAGCC GCATCTTGGT GATCTCTCCG TTTCAGTTAT CGGTATCGAG
GAAGCTCTGG AGCTCTATCC TGCGGATATG CCGCTTCCGC AGATCCTCTT TGACCTCGGC
ATGCGGCAGG TGGTGCTTTC GCCACTGCGT ACCGGGGGAA AGGGTATCGG CTTTCTCTGT
TTTGTTTCAA AGGATGAAAA AAGATGGTCA GAGAGTGAAA AAGAGCTGCT TGCCACACTT
TCATCACCGA TCGCCGTTGC GGTCAGCAAC GCCCTTGCCT ATGAGGAGCT CCGGCAGCGT
GAAGCGCAAA CCGCTATGCA ACTTGCCGTC AACAATGTTC TGCTGACCAT CAAGGATAGA
AACCGGATGC TGTTGGCCGT TTGCGAGCAG ATCGACAAGC TTGTGCCCTG CACTTTCCTT
GGCATTCGCG TCATGGGCGA AGATGGAAAC TACCGCATCT TTGATAATTT CATGCGTGAT
CAGAGCGGGG GTTTTGTGCC GGTCTCTGCG ATTGAGGTAC TTGATGTTGA TGATATTGAG
GCGATAGCAA AGGAAAGTTT TTCCCTGATT TCCAATTCAG GCTGTTTTTG TGGTGATGCG
TTTCTCCGGC TTTCCCGGCA GTACCGGATT CTCGCTCTCG TCAAAGAAAA ATACGGTATC
TGCTCCCTGC TTACGGTTCC GCTCTGGGAT ACACCGGGAA GTCGTGCCGG ACTGATTATC
TCCGACACCT CCCGCTCGTT CGAAGAGCAT GACCAGGCAA CCGTCAACCT GATCGTGCCC
CAGCTCTCTT TGGCCTTGCA GAACTATCTC GCCTTTGAGG AGATTGATGA GCTGCGCCGC
AAGCTGGAGG GCGAGCGCAC CTGCCTCATT GAGGAGATCA AGGCAGCGCA TAACTTTGAG
GAGATCATCG GTAACAGCGC CTCCCTTTCT GCGGTATTGC GCCGGGTGAG CCAGGTTGCT
CCTACCGATG CCACAGTGCT GATTCAGGGT GAAACCGGCA CCGGCAAGGA GCTTTTTGCC
CGAGCCCTGC ACAATCTTTC AGCCCGCAGC AAGCGTGCGT TAATCAAGGT TAACTGTGCG
ACTTTGCCTG GGCCGCTCAT CGAATCGGAG CTTTTCGGTC ACGAAAAAGG GAGTTTTACC
GGCGCCACAG AACGCCGGAT CGGCAAGTTT GAGCTGGCCG AGGGGGGGAC GATTTTTCTG
GATGAAATTG GTGAACTCCC TCTGGAGCTG CAGGCAAAGC TGCTTCGCGT GCTTCAGGAG
CGTGAGCTTG AGCGGCTTGG CGGACGGCAG GTGATCAAGG TTGATGTGCG TGTTATTGCG
GCCACCAACC GTGATCTCGC GCGTGAGGTT GCCGAAGGGC GCTTCCGTGA AGATCTCTTT
TTTCGGCTCA ACGTCTTTCC CCTTTTTATT CCGTCACTCT CTGAACGCCG GGAGGATATT
GCCATGCTTG CCGCCCATTT TGCCGCCAAA TTTTCAAGGG AGTTCGCCAG GCCGCTTCGC
ACCTTCAGGG AGAGCGATAT GCAGCGTCTG GTCGCTCGGG AATGGAAGGG CAATATCCGC
GAGCTTGCCC ACCTGATCGA GCAGGCGGTT ATTGTTTCTG AAGGGGCGTC GCTGGATTTT
TCAGCACTCC TCTCATCGTT GCCCTCCGTT CAGGATGCGC AGCACTCTCT GCGACAGAAA
ACCATGCGCG ATTTTGAATC GGATGTAGCC ATGATGGAGC GGGAGTTGAT TCTGGATGCT
CTCGACCACT CAAACGGCCG GGTGAGCGGT GAGGGTGGCG CTGCAGAAAA GCTTGCCATG
CATCCGAAAA CGCTCTACTC CCGTATTGAC AAGCTCGCTA TCCGTAAACG ATACCAGTAG
|
|---|
| Protein sequence | MSNSSVHEAS MLMQYISDAV GSIRDPQDLF RTVIDKLRLV FEFDSAAILT FDKECRYSNL
FFEMLRFQLP ETIDRNKRLI AGSWIEPHLG DLSVSVIGIE EALELYPADM PLPQILFDLG
MRQVVLSPLR TGGKGIGFLC FVSKDEKRWS ESEKELLATL SSPIAVAVSN ALAYEELRQR
EAQTAMQLAV NNVLLTIKDR NRMLLAVCEQ IDKLVPCTFL GIRVMGEDGN YRIFDNFMRD
QSGGFVPVSA IEVLDVDDIE AIAKESFSLI SNSGCFCGDA FLRLSRQYRI LALVKEKYGI
CSLLTVPLWD TPGSRAGLII SDTSRSFEEH DQATVNLIVP QLSLALQNYL AFEEIDELRR
KLEGERTCLI EEIKAAHNFE EIIGNSASLS AVLRRVSQVA PTDATVLIQG ETGTGKELFA
RALHNLSARS KRALIKVNCA TLPGPLIESE LFGHEKGSFT GATERRIGKF ELAEGGTIFL
DEIGELPLEL QAKLLRVLQE RELERLGGRQ VIKVDVRVIA ATNRDLAREV AEGRFREDLF
FRLNVFPLFI PSLSERREDI AMLAAHFAAK FSREFARPLR TFRESDMQRL VAREWKGNIR
ELAHLIEQAV IVSEGASLDF SALLSSLPSV QDAQHSLRQK TMRDFESDVA MMERELILDA
LDHSNGRVSG EGGAAEKLAM HPKTLYSRID KLAIRKRYQ
|
|---|
| |