Gene Ppha_0063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0063 
Symbol 
ID6462698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp61859 
End bp63478 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content57% 
IMG OID642726365 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_002017036 
Protein GI194335242 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCGAC CAGAACAACA GAAAGGCACA TCGGTAGCGG CAATGCTGCC GAACACAGCC 
CAGACCTACG ACACCGGACT GCGCAAAATC ATCATAACCC TGACGGTTAT CGTTTCAGCC
ATGCTGGAGC TGATCGACAC CACCATTGTC AACGTCGCCA TCACGCAGAT CAGCGGAAAC
CTTGGCGCAA GCATCGAGGA TGTCTCATGG GTGGTCACCA GCTATGCCAT CGCCAACGTC
ATTGTCATTC CCCTCTCCGG GTTTCTCGGC AATCTGCTTG GGCGACGGAA CTACTATATC
GGCTCCATCC TGCTCTTTAC CCTTGCATCG CTCTTTTGCG GCCTGGCAAC CGACATCTGG
GCACTGGTCT TCTTCCGCTT CATTCAGGGA CTCGGCGGCG GTGCGCTTCT GCCAACCTCA
CAGGCCATCC TCTACGAAAC CTACCGCCCT GAAGAGCGGG GCAAGGCAAC CGGCATCTTC
TCCATGGGGC TCGTGCTCGG GCCCACCATC GGCCCGCTGC TTGGAGGCTA TCTGGTTGAC
TACCTTTCGT GGGAATGGTG CTTTTTCGTC AACATTCCGG TCGGGCTTCT TGCCGCATGG
TCATCCTTCA CCTATCTCAG AGAACCAAAG GGACGCCATG CCGTGACAAC AATCGACTGG
ACGGGCATCG GACTTCTCGC CGTCGGTATC GGCTCACTGC AATTCATCCT TGAACGAGGT
CAATCGAAAG ACTGGTTTGA CACACCCTAT ATCACCATTT TCACCTTCAT TGCTGTGGCA
GCCCTCCTTG CATTTGTCTT CTGGGAACTG CACACCAAAG AGCCCGCCGT CGATCTGCGC
GTCCTGGCCC GGAGCAAAAA CCTCGCCATT GCGGCAGTGC TCACCTTTAT TGTCGGTTAC
GGCCTCTATG GCTCACTCTT CGTCTTTCCA GTCTTTGTGC AGCGACTGCT CGGCTTTACC
GCACTGCTGA CCGGGGAGGT ACTCTTTCCA AGCGCCATGG TCACCGGCAT TATCTCCCTC
CCCCTCGGCA TCGCCCTGCA ACGGGGGGTT TCACCAAAAT TACTCATGGC CGTTGGCATG
AGCGCCTTTA TTTTCTTCTG CTTTGAACTC AGCCAGCAGA CCATGCAGTC CGGCTCATCC
AACTTCTTCT GGATACTGCT TGTGCGCGGT GTGGCGCTCG GATTCATCTT CATTCCCGTC
ACCATGCTTG CCGTATCAGG GCTGCACGGC AAAGATATCG GGCAGGCCAC CGGACTCAAC
AACATGGTGC GCCAGCTCGG CGGATCATTC GGCATCGCCC TCACCAACAC CTACATCACC
AACCGCATGG CAACACACAG GGTGGAGCTG CTCAGCCACC TCTCTCCCTA CGACCCGGCA
GCCGCAGAAA GGATCAACCT GCTGCAACAG GCCGCCACAA TCCGGGGCGG GCTATCACCA
GCCGGAGCAG AAACCGTCGC ACTCAAAGCG CTTGAAGGAA CCCTCACAGC CCAGAGCTAC
CACCTTGCCT ACATGGACGC CTTCATGCTG ATAGCATTCC TCTTTACGGT TTGCCTGCCG
CTGCTGCTCC TGATCAGGAT ACAGAAAAAG GAGCCTGTAG ATCTGTCGTC GGCACATTGA
 
Protein sequence
MARPEQQKGT SVAAMLPNTA QTYDTGLRKI IITLTVIVSA MLELIDTTIV NVAITQISGN 
LGASIEDVSW VVTSYAIANV IVIPLSGFLG NLLGRRNYYI GSILLFTLAS LFCGLATDIW
ALVFFRFIQG LGGGALLPTS QAILYETYRP EERGKATGIF SMGLVLGPTI GPLLGGYLVD
YLSWEWCFFV NIPVGLLAAW SSFTYLREPK GRHAVTTIDW TGIGLLAVGI GSLQFILERG
QSKDWFDTPY ITIFTFIAVA ALLAFVFWEL HTKEPAVDLR VLARSKNLAI AAVLTFIVGY
GLYGSLFVFP VFVQRLLGFT ALLTGEVLFP SAMVTGIISL PLGIALQRGV SPKLLMAVGM
SAFIFFCFEL SQQTMQSGSS NFFWILLVRG VALGFIFIPV TMLAVSGLHG KDIGQATGLN
NMVRQLGGSF GIALTNTYIT NRMATHRVEL LSHLSPYDPA AAERINLLQQ AATIRGGLSP
AGAETVALKA LEGTLTAQSY HLAYMDAFML IAFLFTVCLP LLLLIRIQKK EPVDLSSAH