| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0063 |
|---|
| Symbol | |
|---|
| ID | 6462698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 61859 |
|---|
| End bp | 63478 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642726365 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_002017036 |
|---|
| Protein GI | 194335242 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGAC CAGAACAACA GAAAGGCACA TCGGTAGCGG CAATGCTGCC GAACACAGCC
CAGACCTACG ACACCGGACT GCGCAAAATC ATCATAACCC TGACGGTTAT CGTTTCAGCC
ATGCTGGAGC TGATCGACAC CACCATTGTC AACGTCGCCA TCACGCAGAT CAGCGGAAAC
CTTGGCGCAA GCATCGAGGA TGTCTCATGG GTGGTCACCA GCTATGCCAT CGCCAACGTC
ATTGTCATTC CCCTCTCCGG GTTTCTCGGC AATCTGCTTG GGCGACGGAA CTACTATATC
GGCTCCATCC TGCTCTTTAC CCTTGCATCG CTCTTTTGCG GCCTGGCAAC CGACATCTGG
GCACTGGTCT TCTTCCGCTT CATTCAGGGA CTCGGCGGCG GTGCGCTTCT GCCAACCTCA
CAGGCCATCC TCTACGAAAC CTACCGCCCT GAAGAGCGGG GCAAGGCAAC CGGCATCTTC
TCCATGGGGC TCGTGCTCGG GCCCACCATC GGCCCGCTGC TTGGAGGCTA TCTGGTTGAC
TACCTTTCGT GGGAATGGTG CTTTTTCGTC AACATTCCGG TCGGGCTTCT TGCCGCATGG
TCATCCTTCA CCTATCTCAG AGAACCAAAG GGACGCCATG CCGTGACAAC AATCGACTGG
ACGGGCATCG GACTTCTCGC CGTCGGTATC GGCTCACTGC AATTCATCCT TGAACGAGGT
CAATCGAAAG ACTGGTTTGA CACACCCTAT ATCACCATTT TCACCTTCAT TGCTGTGGCA
GCCCTCCTTG CATTTGTCTT CTGGGAACTG CACACCAAAG AGCCCGCCGT CGATCTGCGC
GTCCTGGCCC GGAGCAAAAA CCTCGCCATT GCGGCAGTGC TCACCTTTAT TGTCGGTTAC
GGCCTCTATG GCTCACTCTT CGTCTTTCCA GTCTTTGTGC AGCGACTGCT CGGCTTTACC
GCACTGCTGA CCGGGGAGGT ACTCTTTCCA AGCGCCATGG TCACCGGCAT TATCTCCCTC
CCCCTCGGCA TCGCCCTGCA ACGGGGGGTT TCACCAAAAT TACTCATGGC CGTTGGCATG
AGCGCCTTTA TTTTCTTCTG CTTTGAACTC AGCCAGCAGA CCATGCAGTC CGGCTCATCC
AACTTCTTCT GGATACTGCT TGTGCGCGGT GTGGCGCTCG GATTCATCTT CATTCCCGTC
ACCATGCTTG CCGTATCAGG GCTGCACGGC AAAGATATCG GGCAGGCCAC CGGACTCAAC
AACATGGTGC GCCAGCTCGG CGGATCATTC GGCATCGCCC TCACCAACAC CTACATCACC
AACCGCATGG CAACACACAG GGTGGAGCTG CTCAGCCACC TCTCTCCCTA CGACCCGGCA
GCCGCAGAAA GGATCAACCT GCTGCAACAG GCCGCCACAA TCCGGGGCGG GCTATCACCA
GCCGGAGCAG AAACCGTCGC ACTCAAAGCG CTTGAAGGAA CCCTCACAGC CCAGAGCTAC
CACCTTGCCT ACATGGACGC CTTCATGCTG ATAGCATTCC TCTTTACGGT TTGCCTGCCG
CTGCTGCTCC TGATCAGGAT ACAGAAAAAG GAGCCTGTAG ATCTGTCGTC GGCACATTGA
|
|---|
| Protein sequence | MARPEQQKGT SVAAMLPNTA QTYDTGLRKI IITLTVIVSA MLELIDTTIV NVAITQISGN
LGASIEDVSW VVTSYAIANV IVIPLSGFLG NLLGRRNYYI GSILLFTLAS LFCGLATDIW
ALVFFRFIQG LGGGALLPTS QAILYETYRP EERGKATGIF SMGLVLGPTI GPLLGGYLVD
YLSWEWCFFV NIPVGLLAAW SSFTYLREPK GRHAVTTIDW TGIGLLAVGI GSLQFILERG
QSKDWFDTPY ITIFTFIAVA ALLAFVFWEL HTKEPAVDLR VLARSKNLAI AAVLTFIVGY
GLYGSLFVFP VFVQRLLGFT ALLTGEVLFP SAMVTGIISL PLGIALQRGV SPKLLMAVGM
SAFIFFCFEL SQQTMQSGSS NFFWILLVRG VALGFIFIPV TMLAVSGLHG KDIGQATGLN
NMVRQLGGSF GIALTNTYIT NRMATHRVEL LSHLSPYDPA AAERINLLQQ AATIRGGLSP
AGAETVALKA LEGTLTAQSY HLAYMDAFML IAFLFTVCLP LLLLIRIQKK EPVDLSSAH
|
|---|
| |