| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0046 |
|---|
| Symbol | |
|---|
| ID | 6462734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 43991 |
|---|
| End bp | 44959 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642726348 |
|---|
| Product | Muramoyltetrapeptide carboxypeptidase |
|---|
| Protein accession | YP_002017020 |
|---|
| Protein GI | 194335226 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1619] Uncharacterized proteins, homologs of microcin C7 resistance protein MccF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTGTG GTGTTATGAA AACCATTACC CCAAAAGCCC TGCACAAGGG AGATACCATT
GGCCTGATCT CACCCTCGTC ACATTGCGCC TATCCAGAAA AAATTGGGCA GGCAATCGGT
TATCTCGAAA AAAACGGTTA CCAGGTCAAG CCCTCGCGCC ACCTCAACTG TATTGATACC
GATCCGGCAA TTGCCGACCA GCACAAACTG CATGATCTGC ATGAGATGTT CCGCGAACCC
GCCATAAAGG CAATCATCTG CCTGCGAGGA GGAGCCGGAG CTTCAAGACT GCTAAAAAAA
ATAGATTATA GCCTCATAGC GGACAATCCG AAAATATTTG TCGGCTATTC GGACATTACT
GCATTGTCGC TCGCCCTCTT TGCAAAAACA GGCCTGATCA GTTTTTCAGG GCCGATGCTC
ACCACAGAAC TGTACGAACC GACACCCTAC ACCGAAGAGC ATTTTTGGGA AATGCTCACC
TCACCCTCCT ATGCACTTTC GCTTCGGAAC CACCCGGCCC ACCCCGTAAC CTGCATCAGA
GCGGGTGAAG CTGAGGGGAG CCTGATCGGC GGCAATCTCT CCGTCCTCTC TTCAATGATC
GGAACGCCCT ATCTGCCCTC ATTAAATGAC GCGCTGCTTT TTCTGGAAGA CATTAACGAA
CCGGCATACC GCATCGACAG AATGCTCTCG CATCTCGACA ACGCGGCCTT ACTTGCGTCA
TGCAAGGGAG TTCTTTTCGG CCAGTTCGGC AATGGCGCGG AGAATACAAA AGAGGAACAT
CTCCGCTTGC AAAATATCTT TGCCTATTAC AGCGAACACG CCCATACCAA TGGCCCGGTA
ATGAGGGGGC TCTCTTATGG CCATATCAGA AATCTGATGA CTATCCCTGT TGGAGCCCGA
TTCAAAATGC GGGTTACTGA AACAGGCGAC TTTTCTCTCG GAGCACTCCA TCCGGTCATC
GAAGAGTAG
|
|---|
| Protein sequence | MFCGVMKTIT PKALHKGDTI GLISPSSHCA YPEKIGQAIG YLEKNGYQVK PSRHLNCIDT
DPAIADQHKL HDLHEMFREP AIKAIICLRG GAGASRLLKK IDYSLIADNP KIFVGYSDIT
ALSLALFAKT GLISFSGPML TTELYEPTPY TEEHFWEMLT SPSYALSLRN HPAHPVTCIR
AGEAEGSLIG GNLSVLSSMI GTPYLPSLND ALLFLEDINE PAYRIDRMLS HLDNAALLAS
CKGVLFGQFG NGAENTKEEH LRLQNIFAYY SEHAHTNGPV MRGLSYGHIR NLMTIPVGAR
FKMRVTETGD FSLGALHPVI EE
|
|---|
| |