Gene Paes_2012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_2012 
Symbol 
ID6459821 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp2208851 
End bp2209942 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content48% 
IMG OID642725995 
Productprotein of unknown function UPF0118 
Protein accessionYP_002016669 
Protein GI194334809 
COG category[R] General function prediction only 
COG ID[COG0628] Predicted permease 
TIGRFAM ID[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.578603 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAGGG CTGAACTTAA TAATCTTGTT CTGCTGGTCT TTGTTCTGCT TATTTCGGCA 
ATCTTTTTTT CCATGATCTA TGATTTTCTC ATGGTTATTC TGATTGCTGC AATCTTTTCA
AGTCTTGCGT TGCCTGTCAA CAGGTTTTTT GAGCGTCTGT TCAAGGGGAA AAAGAGCTTG
AGTTCGGCTT TAGCCCTTGT CTCTATTTCC CTGATCGGCA TTTTTCCGCT CTTTGCCCTG
ATGGGAATCG TTGCAGCCCA GGCAGTCCGC ATCAGTCGAT CCGCAGGTCC ATGGATCGAA
AAACGTCTGG AGGAGCCGAC GGCCTTTCAT GATTTGTTTC TTACGCTGCC GTTTTATGAA
ACGATCAACG CCTACAGCGA TCTCATTCTT CAGAGACTGG GTGAAATGGT CAGTAAAACG
GGAACCTTTC TTTTCGAAAA CATCTCGTCG TTCACACTGT CGACCGTGCA TACGCTCTTT
CTTTTTTTTG TTTTCCTCTA TACCATGTTT TTTTTCCTTC GTGACGGCCG CGATATGCTG
CAGCAGGCGC TCTACTACAT GCCGCTGAAC CAAAGCGATC AGTCGCGCAT GCTCGACAAG
TTTACCTCTG TGACCCGAGC CACTATTCGC GGTACGTTCG TTATCGGGAT TATCCAGGGA
ACGCTGGCAG GCCTGGCTTT TCAGGTTGCC GGTATTGAAA GCGCCGTTTT CTGGGGTGCG
ATCATGACTG TCCTGTCGGT CATACCCGTT GTCGGTTCCG GTCTTGTCTG GGTTCCTGCT
GTTCTATATC TCTATGCGAC AGGGGAGAAT GTTGCTGCCA CCGGCCTTTT GATTTTCTGC
GGCATTCTTG TCAGCAGCAT CGATAATATA CTTCGTCCGG TTCTTGTTGG TCGTGATACC
CGGATGCACG AATTGCTGAT TTTTTTCGGG ACTATCGGCG GTATCGGTTT GTTTGGCATA
GCAGGTTTTA TCGTCGGTCC GATCATCGCC GCGTTGTTTA TTACCGTCTG GGAGATTTAT
GGCGAAACTT TCAAGGAGTA TCTCAACGAC GCCAAACAGG CGGGAGATTC TGCTGATGAA
GAGTCGTTAT AG
 
Protein sequence
MKRAELNNLV LLVFVLLISA IFFSMIYDFL MVILIAAIFS SLALPVNRFF ERLFKGKKSL 
SSALALVSIS LIGIFPLFAL MGIVAAQAVR ISRSAGPWIE KRLEEPTAFH DLFLTLPFYE
TINAYSDLIL QRLGEMVSKT GTFLFENISS FTLSTVHTLF LFFVFLYTMF FFLRDGRDML
QQALYYMPLN QSDQSRMLDK FTSVTRATIR GTFVIGIIQG TLAGLAFQVA GIESAVFWGA
IMTVLSVIPV VGSGLVWVPA VLYLYATGEN VAATGLLIFC GILVSSIDNI LRPVLVGRDT
RMHELLIFFG TIGGIGLFGI AGFIVGPIIA ALFITVWEIY GETFKEYLND AKQAGDSADE
ESL