Gene Paes_1998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_1998 
Symbol 
ID6460777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp2195799 
End bp2196800 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content49% 
IMG OID642725982 
Productbacteriochlorophyll c synthase 
Protein accessionYP_002016656 
Protein GI194334796 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0382] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 
TIGRFAM ID[TIGR01476] bacteriochlorophyll/chlorophyll synthetase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.451912 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGACGG CAACTCACCG ACTTGGATTT ACCGATAAAC TCAGGGCGCA TCTCGAATTA 
CTCGATCCTG TAACCTGGAT CAGCGTGTTT CCCTGCCTTG CCGGCGGCGT CATGGCTTCC
GGGGCAATGC AGGGAACCTT TCATGACTAT CTTCTTCTTT TGGCTCTTTT TCTCATGTTC
GGACCGCTCG GGACCGGATT CAGCCAGACA ATCAATGATT ATTTCGATCT CGAACTCGAC
AGGGTCAACG AGCCGACCCG TCCTATTCCT TCAGGCCGCC TTTCAGAAAA AGAGGCACTG
ATCAACAGTA TCGTTGTTTT TGTGCTTGCG CTTGGAATCG GTATCGTTCT GGGGATTCAT
GTCGGCGGGA CAAGGGGGAT ATTCATTACT TCAGCAATTG CTGTCGGCCT TTTTGTTGCC
TATATCTATT CCGCCCCTCC GCTGAAGCTC AAAAAGAATA TTCTTACCTC CGCACCTGCA
GTCGGGCTTT CCTACAGTCT GATCACCTTT CTGTCGGCCA ACGCACTCTT CAGCGATATC
CGCCCTGAAG CTGTCTGGCT TGCTGTGCTG AACTTCTTTA TGGCTATTGC CCTCATTATC
ATGAACGACT TCAAGTCTGC CAAAGGCGAT GAGGAGAGCG GCTTGAAATC TCTGACGGTC
ATGATCGGAG CAAAAAACAC CTTTCTTGTC GCATTTGCCA TCATCGATAT GGTGTTCGCC
GTTTTTGCCT GGCTGACCTT TAGCTGGGGT TTCACGATTC TTATGTATGT TATTCTCGTC
TCACTCGTGG CAAATATCAC TATTCAGATT ATGCTCTATC GCGATCCGAA GGGCGGCCTC
TCATTCATGC AGCATGCGGT TGATGATGGT TTCGGCAACG CGATCGGCAA GAGCGATGTA
CAGGAGCACA ATTCCTTTCT TCGTTACCAG GTGGCCAATA ATCTGCTTTT TCTGATCAAT
CTTCTTGTTG CGGCGGGAAT GGTCGGTGCC AGGTATATGT AA
 
Protein sequence
MMTATHRLGF TDKLRAHLEL LDPVTWISVF PCLAGGVMAS GAMQGTFHDY LLLLALFLMF 
GPLGTGFSQT INDYFDLELD RVNEPTRPIP SGRLSEKEAL INSIVVFVLA LGIGIVLGIH
VGGTRGIFIT SAIAVGLFVA YIYSAPPLKL KKNILTSAPA VGLSYSLITF LSANALFSDI
RPEAVWLAVL NFFMAIALII MNDFKSAKGD EESGLKSLTV MIGAKNTFLV AFAIIDMVFA
VFAWLTFSWG FTILMYVILV SLVANITIQI MLYRDPKGGL SFMQHAVDDG FGNAIGKSDV
QEHNSFLRYQ VANNLLFLIN LLVAAGMVGA RYM