| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_1827 |
|---|
| Symbol | |
|---|
| ID | 6460668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | - |
|---|
| Start bp | 1992448 |
|---|
| End bp | 1994499 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642725811 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_002016486 |
|---|
| Protein GI | 194334626 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.54987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGACA GCAGTGACCG ATACAGACTT GAGAGCAGTT ACGAACCGAT GGGGGACCAG
CCGGGGGCTA TTGATGCGCT TTCGGCAGGC GTGCGTGACG GGGAGCCTTG TCAGACCCTT
CTCGGGGTTA CCGGTTCCGG AAAAACGTTC ACCATGTCGA ATGTGATTGC CAGAGCGGGC
AAACCAGTGC TGGTGATCAG TCATAACAAA ACGCTCGCCG CGCAGCTTTA TGGAGAGTTG
AAGCAGTTTT TTCCTCATAA CGCGGTGGAG TACTTCATCA GTTATTACGA TTTTTATCAG
CCCGAAGCAT ATATCCCTTC AATGGACAAG TATATTGCCA AGGACCTGCG TATCAATGAG
GAAATTGAGC GGCTGAGGCT CCGGGCGACC AGTGCACTCC TGTCAGGCCG ACGGGATGTT
ATTGTGGTGA GTTCTGTGAG CTGTATTTAC GGCCTGGGCT CGCCCGAAGA CTGGATGGCG
CAGATTCTCG AGCTGCGGAC AGGTATGGAT ATGGATCGGG AGGCTTTTCT TCAGCGTTTG
GTGGATCTGC ATTTTGTCCG CGATGACATG GAGCTTTCGT CAGGAAAGTT TCGTGTACGC
GGCGACGTCA TCGATCTGGT CCCTGCCCAT GAGGAGGATG CCCTGCGTGT GGAATTTTAC
GGCAGTGAAA TCGACCGCTT GCAGCTCTTC AATCCCCGGA CAGGAGAGAT CATAGAGGAG
CAGGAGTATG CCTGTATCTA TCCCGCTCGT CAGTTTGTTG CCGATAAAGC ACGGCTTGAG
GCTGCAATGC TTTCCATTGA GAATGAACTT GCCGGTCGGC TCAACACCTT TCGTGCAGAA
GACCGTCTTG TTGAAGCTCG CAGGCTCGAG GAGCGGACCC GTTACGATCT TGAAATGATA
AAAGAGCTTG GTTACTGTTC CGGGATCGAA AACTACTCGA GCCACCTGTC GGGGCGTAAG
GCGGGCGAGA GACCATACTG CCTGCTTGAT TATTTTCAGG ATGATTATAT GGTCGTTATC
GATGAGTCGC ATGTAAGTCT CCCCCAGATA CGGGGAATGT ATGCCGGGGA CCGCTCGCGA
AAAACAATTC TGGTTGAGCA CGGTTTTCGC CTTCCTTCAG CTCTCGATAA CCGTCCTTTG
CGATTCGAGG AGTTTGAAGA GGTCGTTCCC CAGATGATCT GTGTGAGTGC AACGCCCGGC
GATTACGAAC TCACTCGTTC ACAAGGGGTG GTTGTAGAGC AGCTGGTCAG ACCTACCGGA
CTGCTCGATC CCGAGATAAC CGTTCGTCCG GTCAGCGGTC AGATCGATAA TCTTCTTGAG
GAGATCCGTC AGAACACCGC TAAAGGGTTT AAAACTCTTG TTATGACGAT TACCAAGCGG
ATGAGCGAGG ATCTGCATGA CTTTCTTCGT AAGGCCGGCG TTCGTTCACG CTACCTGCAT
TCGGAGATCA AGAGTCTTGA ACGCATTCAG ATTCTGCGGG AACTTCGCGC CGGCGATGTT
GATGTTCTGG TCGGGGTTAA CCTGCTCAGG GAGGGGCTTG ATCTTCCCGA GGTAGCCCTT
GTAGCGATTC TTGATGCCGA TAAACAGGGC TTTCTGCGTG ATGCCCGTTC TCTTATGCAG
ATTGCCGGAA GAGCGGCAAG GAATGTTGAG GGACGAGTTG TATTTTACGC AGACAGGATC
ACTCCGTCAA TGCGTGAGGT GATCGATGAA ACCGACCGGC GCAGAAAAGT GCAGCAGCAG
TTCAATGAAG AGCATGGCAT CGTTCCCCGT TCGATCATCA AGTCTGTTGA TCAGGTACTC
AATACAACCA GCGTTGCCGA TGCCGAAGAG CGTTTCCGGC GCAAGAGGCT TGGCCTTCAA
CAGAAAAACG AGCGTCTGCT CGAGGGCGTT ATCGATACCT TGAGCCCTGA AGAGCTCTCT
TCCATGGCAG AAGATCTGAA ATGTGAAATG CAGGAGGCAG CAGAGAGCAT GGAGTATGAA
AAAGCAGCGT GGTTGCGTGA CGAGATTTCC AAAATCGAGC ATGCTGCCGG CGGTAGCGCA
AAACAACCCT GA
|
|---|
| Protein sequence | MPDSSDRYRL ESSYEPMGDQ PGAIDALSAG VRDGEPCQTL LGVTGSGKTF TMSNVIARAG
KPVLVISHNK TLAAQLYGEL KQFFPHNAVE YFISYYDFYQ PEAYIPSMDK YIAKDLRINE
EIERLRLRAT SALLSGRRDV IVVSSVSCIY GLGSPEDWMA QILELRTGMD MDREAFLQRL
VDLHFVRDDM ELSSGKFRVR GDVIDLVPAH EEDALRVEFY GSEIDRLQLF NPRTGEIIEE
QEYACIYPAR QFVADKARLE AAMLSIENEL AGRLNTFRAE DRLVEARRLE ERTRYDLEMI
KELGYCSGIE NYSSHLSGRK AGERPYCLLD YFQDDYMVVI DESHVSLPQI RGMYAGDRSR
KTILVEHGFR LPSALDNRPL RFEEFEEVVP QMICVSATPG DYELTRSQGV VVEQLVRPTG
LLDPEITVRP VSGQIDNLLE EIRQNTAKGF KTLVMTITKR MSEDLHDFLR KAGVRSRYLH
SEIKSLERIQ ILRELRAGDV DVLVGVNLLR EGLDLPEVAL VAILDADKQG FLRDARSLMQ
IAGRAARNVE GRVVFYADRI TPSMREVIDE TDRRRKVQQQ FNEEHGIVPR SIIKSVDQVL
NTTSVADAEE RFRRKRLGLQ QKNERLLEGV IDTLSPEELS SMAEDLKCEM QEAAESMEYE
KAAWLRDEIS KIEHAAGGSA KQP
|
|---|
| |