| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0288 |
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| Symbol | rpoB |
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| ID | 6458773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prosthecochloris aestuarii DSM 271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011059 |
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| Strand | + |
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| Start bp | 301789 |
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| End bp | 305694 |
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| Gene Length | 3906 bp |
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| Protein Length | 1301 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642724284 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002014992 |
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| Protein GI | 194333132 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.120882 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0261022 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAGTGG CTGATAAAAC ACCAAGGAAG TGTATTGCCT TTTCCAAAAT CCAGAGTATT
GTAGATCCTC CCGATTTATT ACAAGTTCAG TTAGATTCCT TCAATACCTT TATACAAGAT
AGCGTGCCCC TTGAGAAACG CAAAGATCAG GGGCTGGAAA AAGTGCTGCG AAGTGCTTTT
CCAATAACTG ACACAAGGGG ACTTTATTTA CTTGAATATA TTTCATACTC CTTTGACAGA
CCGAAATATT CGGTTGAGGA GTGCATAGAG AGAGGTTTGA CCTATGATGT TTCGCTCAAG
GTCAAACTCA AACTTTCCTA CAAGGACGAG CCTGATGAAA CCGACTGGAA GGAAACCATC
CAGCAGGAGG TCTATCTCGG CAGAATTCCT TACATGACCG GACGGGGCAC GTTTATCGTC
AACGGTGCTG AACGCGTTGT TGTCGCTCAG CTGCACCGCT CTCCAGGCGT TGTCTTCAGT
GAGGCCGTTC ATCCAAACGG CAAGAAGATG TATTCTGCTA AAATTGTGCC GACACGAGGC
TCGTGGATCG AGTTTCAGAC CGACATCAAC AATCAGATAT ATGTCTATAT CGACCAGAAA
AAGAACTTTC TGGTCAGCGC TCTGTTACGC GCTATCGGGT TTGCCAAGGA TGAGGATATC
CTCGGACTGT TCGATATGGT TGAAGAGGTG CCGGTCAAGA GCAACAAAAA AGATTACCTC
ATTGGTAAAA ACCTTGCGTC TGATATCATC GATATGCAAA CTGGTGAGGT TGTCAGCGCC
AGGACCGCTA TTACCGAGGA TATTCTTGAT CAGATTACCG CAGCCGGCTA CAAGAGTGTC
AGTATTATCC GTGCTGCCGA TGAAAACGGT CTCGACAAGT CGATCATCAC CAACACGATC
CTCAACGACA GTTCAGCGAC AGAGGAAGAG GCGCTCGAAA TTGTTTACGA GGAACTGCGT
GCCAACGAGG CGCCCGATAT CGATGCTGCA AGAAGCTTCC TTGAAAGGAC GTTTTTCAAT
CAGAAAAAAT ATGATCTCGG CGATGTAGGC CGTTACCGTA TTAATAAGAA GCTCGGTCGT
GAACAGCAGG AGTTCATGGA TTATATCGGA GGAAACCCTG AACTCAAGCA GCTTTCCGAT
GCCATTTACG AGAAGATTCT CCTGACCATC CAGTCCTATT CCGACGAGCC GGTAGGCGAA
GATATTATGG TGCTGACGCA TTATGATATC ATCTCGGTCA TCTACTACCT CATCAAGCTC
GTCAATGGAC AGGCAGAGGT CGATGACGTC GATCATCTGG CCAACAGGAG GGTTCGTACT
GTAGGCGAAC AGCTTGCAGC ACAGTTTGTG ATCGGCCTTG CCCGCCTTGG CAAAAATGTT
CGTGAAAAAC TCAATTCGAG GGATTCCGAC AAGATTGCTC CTGCAGATCT GATCAATGCG
AGAACCGTTT CAAGCGTCGT TTCGAGCTTT TTCGCTACGA GCCAGCTTTC CCAGTTTATG
GATCAGACCA ACCCTCTCGC GGAGATGACC AACAAACGCA GGGTTTCTGC GCTTGGTCCC
GGCGGTCTTA CCCGTGAGCG CGCAGGCTTT GAAGTTCGTG ACGTTCACTA CACGCATTAC
GGACGTCTCT GTCCTATCGA AACGCCTGAA GGTCCCAATA TCGGTCTTAT CTCTTCTTTG
TCTGTGTACG CCGAAATCAA CGATAAAGGA TTTATCCAGA CTCCTTACCG TGTTGTAACA
AAGGGCGTTG TCACCGACGA GGTGCTGATG CTTTCGGCAG AGGACGAAGA GAACAAGATT
ACTGTACCGG TTAATGTTCC TCTTGATGAA AATCGTAAAA TCGCCAGCGA GACAGTTCAG
GCAAGGACCA AAGGTGACTA TCCTGTGGTG ACAGCTGAAG AGGTTGACTA CATGGATGTT
TCTCCGGTTC AGATTGTCAG TGCTGCCGCT GCCCTTATCC CGTTTCTCGA ACACGATGAC
GGTAATCGTG CGCTTATGGG CGCAAACATG CAGCGCCAGG CCGTTCCGCT TCTTGTTGCA
GATGCCCCGA TCGTCGGAAC AGGTATGGAG GCGAAGGTCG CGCGGGATTC CCGTTCTGTT
ATAGTCGCCG AAGGGCCCGG GGTTGTCGAA TCGGTAACAG CCGAGAGTAT CAGGGTTCGT
TATGATGTCG AAGGGCAGGG CGACAACCAT GTTGTCATGC TTGATCCGGA TGAAGGGGTG
AAAACCTATA CGCTGATCAA GTTCAAACGT TCGAACCAGG ACACCTGCAT TACGCAGAAG
CCTTTTGTCT ATGAAGGCCA GGTTCTTGCC AAAGGGGACG TGATCGCTGA CGGGTCATCG
ACTGAAAGCG GTGAACTTGC TCTTGGTAAA AACGTCCTGG TAGCCTTTAT GCCATGGAGA
GGTTACAACT TTGAGGATGC TATCGTTCTG AGTGAGCGTC TTGTCTATGA CGATGTGTTG
ACCTCGATTC ATATCCACGA GTTTGAAGCA AACGTCCGCG ATACCAAACG CGGTGAAGAA
CAGTTTACTC GTGACATCTA CAATGTCAGT GAAGATGCGC TGAGAAATCT TGATGAAAAC
GGTATCATCC GCATCGGCGC AGAGGTGAAA GAGCGTGATA TTCTTGTTGG AAAGATCACT
CCGAAGGGGG AGAGCGATCC GACACCGGAA GAAAAACTGC TGCGAGCTAT TTTCGGCGAT
AAATCCAGCG ACGTCAAGGA TGCTTCGATG CACGTTCCTG CAGGCATGAA AGGTATTGTC
ATCAAGACAA AACTTTTCAG CCGCAAGAAA AAGGTCGGTA TGGACGTCAA AGAACGCAGC
GAGGCAATTG AAAAGCTGTT TGAACGTAAA GAAATGGATT TGCGTTCACG ATTCAGCAAA
TGGCTTAAAA AGCTGCTTGA AGGAAAGGTC TCTACCGGTG TTTTCAATGA CAAAGGCAAG
GCTATTATAC CTCCAGGATC GCTCTACGAT GCCGGATTGC TGAGCAAATT CAGCGGTCTT
GGATTCCTTG AGACGGTCGA TTTGTCGAAA GGCTTTATCG AAGACACGAA AGTTAATGCC
AACGTTGTCC AGCTTATTAA AGAGTATCGT TTAATGCTCA AGGACCATGC CGACGAGCGA
GACAACGAGA AGTATAAGCT CAATGTCGGA GATGAACTTC CTCCTGGAAT CGAGGAACTG
GCCAAGGTCT ATATCGCACA GAAGCGCAAG ATCCAGGTCG GTGACAAGAT GGCAGGTCGC
CACGGTAACA AGGGTGTTGT CGGCAAGATT CTCCCTATTG AGGATATGCC GTTCATGGCT
GACGGTACCC CGGTTGATAT CGTTCTCAAT CCGCTCGGCG TTCCGAGTCG TATGAATATC
GGTCAGCTTT ACGAGACGTC ACTCGGCTGG GCGGGCAAAT CACTTGGTGT CAATTTCAAG
ACACCTATTT TCGACGGTGC AACGTATGAA GAAGTTCAGG AGCAGCTCTC AAAAGCCGGT
CTGCCTTCTC ATGGAAAGGT CAGGCTCTAC GACGGAAGAA CCGGCGAGGC GTTTGATGAC
GAAGTTACCG TTGGTTACAT CTATATGCTG AAGCTGAGTC ATCTTGTCGA TGATAAAATC
CATGCCCGTT CAACCGGACC ATACTCGCTC ATTACCCAGC AGCCGCTTGG TGGTAAGGCG
CAGTTTGGCG GTCAGCGGTT TGGTGAGATG GAGGTATGGG CTCTTGAGGC ATATGGTGCA
GCCAATATTC TCAGAGAGAT GCTGACAGTC AAATCAGATG ACGTTATCGG CCGTAACAAG
ACCTATGAAG CTATTGTTAA AGGCCAGAAC CTTCCCAATC CGGGTACTCC CGAGTCGTTC
AACGTTCTGG TTCGCGAGCT CCAGGGGTTG GGCCTTGAGA TACGTATCGA CGACAAAGTG
CCTTAG
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| Protein sequence | MKVADKTPRK CIAFSKIQSI VDPPDLLQVQ LDSFNTFIQD SVPLEKRKDQ GLEKVLRSAF
PITDTRGLYL LEYISYSFDR PKYSVEECIE RGLTYDVSLK VKLKLSYKDE PDETDWKETI
QQEVYLGRIP YMTGRGTFIV NGAERVVVAQ LHRSPGVVFS EAVHPNGKKM YSAKIVPTRG
SWIEFQTDIN NQIYVYIDQK KNFLVSALLR AIGFAKDEDI LGLFDMVEEV PVKSNKKDYL
IGKNLASDII DMQTGEVVSA RTAITEDILD QITAAGYKSV SIIRAADENG LDKSIITNTI
LNDSSATEEE ALEIVYEELR ANEAPDIDAA RSFLERTFFN QKKYDLGDVG RYRINKKLGR
EQQEFMDYIG GNPELKQLSD AIYEKILLTI QSYSDEPVGE DIMVLTHYDI ISVIYYLIKL
VNGQAEVDDV DHLANRRVRT VGEQLAAQFV IGLARLGKNV REKLNSRDSD KIAPADLINA
RTVSSVVSSF FATSQLSQFM DQTNPLAEMT NKRRVSALGP GGLTRERAGF EVRDVHYTHY
GRLCPIETPE GPNIGLISSL SVYAEINDKG FIQTPYRVVT KGVVTDEVLM LSAEDEENKI
TVPVNVPLDE NRKIASETVQ ARTKGDYPVV TAEEVDYMDV SPVQIVSAAA ALIPFLEHDD
GNRALMGANM QRQAVPLLVA DAPIVGTGME AKVARDSRSV IVAEGPGVVE SVTAESIRVR
YDVEGQGDNH VVMLDPDEGV KTYTLIKFKR SNQDTCITQK PFVYEGQVLA KGDVIADGSS
TESGELALGK NVLVAFMPWR GYNFEDAIVL SERLVYDDVL TSIHIHEFEA NVRDTKRGEE
QFTRDIYNVS EDALRNLDEN GIIRIGAEVK ERDILVGKIT PKGESDPTPE EKLLRAIFGD
KSSDVKDASM HVPAGMKGIV IKTKLFSRKK KVGMDVKERS EAIEKLFERK EMDLRSRFSK
WLKKLLEGKV STGVFNDKGK AIIPPGSLYD AGLLSKFSGL GFLETVDLSK GFIEDTKVNA
NVVQLIKEYR LMLKDHADER DNEKYKLNVG DELPPGIEEL AKVYIAQKRK IQVGDKMAGR
HGNKGVVGKI LPIEDMPFMA DGTPVDIVLN PLGVPSRMNI GQLYETSLGW AGKSLGVNFK
TPIFDGATYE EVQEQLSKAG LPSHGKVRLY DGRTGEAFDD EVTVGYIYML KLSHLVDDKI
HARSTGPYSL ITQQPLGGKA QFGGQRFGEM EVWALEAYGA ANILREMLTV KSDDVIGRNK
TYEAIVKGQN LPNPGTPESF NVLVRELQGL GLEIRIDDKV P
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