| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0285 |
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| Symbol | rplA |
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| ID | 6460418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prosthecochloris aestuarii DSM 271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011059 |
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| Strand | + |
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| Start bp | 299896 |
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| End bp | 300585 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642724281 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_002014989 |
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| Protein GI | 194333129 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000105773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00394818 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCTGGAA AGAATTACAA AAACGCGTTA GGTAAGTTCA CTGCCCAGGC AGAATATGAT
CTTCCTTCCG CTATTGAGCT TGTCAAGGAG ATGACGACGG TCAAGTTTGA TGCATCGGTT
GACGTTGCGC TCAAACTCGG AGTCGATCCG CGTCATGCTG ATCAGGTTGT CCGTGGAACG
GTCATGCTTC CGCATGGTAC CGGAAAAACG GTATCCGTAC TGGTCATCTG CAACGAGGCT
AAAGCTACCG AGGCTGAAGA GGCCGGGGCG GACTTTGTAG GCTTTGAGGA TTACATTGAA
AAAATTCAGA ACGGATGGAC CGATGTCGAT GTCATTATCG CGACACCTGA TGTTATGGGT
AAACTTGGCC GGGTCGGTAA GATCCTCGGA CCGCGCGGCT TGATGCCAAA TCCGAAATCC
GGTACAGTGA CTATGGATGT CGCCAAGGCT GTCAGTGAAG TTAAGGCCGG TAAAATTGAA
TTCAGGGTGG ATAAAGCAGG CAACGTCCAT GCTCCAGTCG GAAAGGTCTC ATTCGGGGCC
GACCAGCTTG TCGAAAACGT GTTGAGTTTC GTTAAAGAGG TTGTGCGTCT GAAACCTTCA
GCTGCCAAAG GGCAGTATCT GCAGAGCATG TCCGTCTCGA GCACCATGTC TCCCGGTGTG
CGAGTCAAGA AAGAGAAGTT TGTTGCCTAA
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| Protein sequence | MAGKNYKNAL GKFTAQAEYD LPSAIELVKE MTTVKFDASV DVALKLGVDP RHADQVVRGT
VMLPHGTGKT VSVLVICNEA KATEAEEAGA DFVGFEDYIE KIQNGWTDVD VIIATPDVMG
KLGRVGKILG PRGLMPNPKS GTVTMDVAKA VSEVKAGKIE FRVDKAGNVH APVGKVSFGA
DQLVENVLSF VKEVVRLKPS AAKGQYLQSM SVSSTMSPGV RVKKEKFVA
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