Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Paes_0183 |
Symbol | |
ID | 6459370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prosthecochloris aestuarii DSM 271 |
Kingdom | Bacteria |
Replicon accession | NC_011059 |
Strand | + |
Start bp | 190322 |
End bp | 192019 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642724176 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_002014889 |
Protein GI | 194333029 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.140386 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAATGA TGCAGAGCAG CAAATACGCT GCATACCCGG TGGTTGACAT TTCTGACAGA ACATGGCCGG ATAAGCGGAT CACCCGCGCA CCCGTCTGGT GCAGTATCGA TTTGAGGGAT GGAAATCAGG CGCTTCCGGT TCCCATGAGT GTTCAGGAAA AGATCGAGAT GTTCAAGCTG CTTATCGGGA TCGGCTTCAA AGAGATCGAA GTGGGTTTTC CTTCCGCGTC GGCTGTTGAA TTTCAGTTTG TCAGAACGCT GATCGAGGAA AACCTTATTC CTGACGATGT GACCATACAG GTCCTGACTC AGGCCAGAGA ACATTTGATT CGTAGAACTT TTGAATCGCT CGAAGGGGCG AATCGTGCTA TCGTTCATCT CTATAATTCA ACGTCAACCG TTCAGCGCGA CGTTGTGTTC CGCAAGAACC GCCAGGAGAT CAAGGAGATT GCGATCCGGG GAACCGCACT GGTCCGTGAG CTCCGCGAGG CTTTCGGCAA CAAAGGGATC CGTTTCCAGT ACAGCCCTGA AAGTTTTACG GGGACCGAGC TCGAATATGC ACTTGAAGTA TGCCAGGCTG TGATGGAGAC CTGGGGAGCG TCTGCTGATG AGAAGGTTAT TGTCAACCTT CCGTCTACGG TGGAGATGTC TACACCCAAT ATTTTCGCTG ACAGGATAGA GTGGTTCTGC CGCAACCTTT CGGACCGTGA TGCTGCCATT ATCAGTGTCC ATACCCACAA TGATCGGGGA ACGGCCGTTG CTTCCGCCGA ACTGGCCATG ATGGCCGGCG CCGACAGAGT TGAGGGGGCG CTCTTCGGGA ACGGTGAACG ATGCGGAAAC CTGGATATTA TTACCATGGC GCTCAATATG TATACGCAGG GTGTCGATTC CAGGCTTGAT TTTTCAAATC TGACCCATCT GACCGAGGTC TACCGCGAAT GTACCCGCAT GCCTGTCCAT CCCCGTCATC CGTATGCAGG TGAACTGGTT CATACCGCCT TTTCCGGTTC TCATCAGGAT GCTATCAATA AAGGGATGAA GGCTCGTACC GAAAGCGAAA ACGAAGTGTG GTGCGTACCC TATCTGCCGA TTGACCCGAA GGATGTCGGT TTTTCCTACA AGGCGATTGT CAGGATTAAC AGCCAGTCAG GGAAAGGCGG CGTGGCGTAC GTGATGGAAA AGGAGTTCGG CTACAGTCTT CCAAAATGGC TGCAGCCGGA TTTTGGCTTG GTGGTTCAGG CAATTGTTGA TCGGGAGGGC AGGGAACTTT CTCCCGAGGA GATCCGTGAC CTTTTCAGTC GGGAATATGT GCGCCTCGAG AGACCCTATT TGCTGAAAAA ATGTCATATC AGCTGGGAAG ATGAGGATCC TGATAGAAAC GACGAGGTCG CTACAACGAT CACAAGTGCG TTGCAGGAGG GCGAACGTGA ATTCGGCTTT ACCGCGCGAG GAAATGGTCC GGTCGATGCT TTTGTGACGG GATTTATCCA TGATAGCGGG ATAGACTTCA TCGTCAGCGA GTATTCGGAG CATGCCATCG GTCATGGCGC CGATACGCAG GCTATTGCCT ATGTCAAGAT TACTCTGCCT GACGGCACTG TCTCCTATGG TGCGGGGATC GATTCCAATA TCAGTCTGGC TTCGATCAAA GCCGTCATGA GTGCCGTTAA CAGACTCGAT ACTCAAGCAA AAAAGTAA
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Protein sequence | MAMMQSSKYA AYPVVDISDR TWPDKRITRA PVWCSIDLRD GNQALPVPMS VQEKIEMFKL LIGIGFKEIE VGFPSASAVE FQFVRTLIEE NLIPDDVTIQ VLTQAREHLI RRTFESLEGA NRAIVHLYNS TSTVQRDVVF RKNRQEIKEI AIRGTALVRE LREAFGNKGI RFQYSPESFT GTELEYALEV CQAVMETWGA SADEKVIVNL PSTVEMSTPN IFADRIEWFC RNLSDRDAAI ISVHTHNDRG TAVASAELAM MAGADRVEGA LFGNGERCGN LDIITMALNM YTQGVDSRLD FSNLTHLTEV YRECTRMPVH PRHPYAGELV HTAFSGSHQD AINKGMKART ESENEVWCVP YLPIDPKDVG FSYKAIVRIN SQSGKGGVAY VMEKEFGYSL PKWLQPDFGL VVQAIVDREG RELSPEEIRD LFSREYVRLE RPYLLKKCHI SWEDEDPDRN DEVATTITSA LQEGEREFGF TARGNGPVDA FVTGFIHDSG IDFIVSEYSE HAIGHGADTQ AIAYVKITLP DGTVSYGAGI DSNISLASIK AVMSAVNRLD TQAKK
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