Gene Paes_0183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_0183 
Symbol 
ID6459370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp190322 
End bp192019 
Gene Length1698 bp 
Protein Length565 aa 
Translation table11 
GC content52% 
IMG OID642724176 
Product2-isopropylmalate synthase 
Protein accessionYP_002014889 
Protein GI194333029 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID[TIGR00970] 2-isopropylmalate synthase, yeast type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.140386 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAATGA TGCAGAGCAG CAAATACGCT GCATACCCGG TGGTTGACAT TTCTGACAGA 
ACATGGCCGG ATAAGCGGAT CACCCGCGCA CCCGTCTGGT GCAGTATCGA TTTGAGGGAT
GGAAATCAGG CGCTTCCGGT TCCCATGAGT GTTCAGGAAA AGATCGAGAT GTTCAAGCTG
CTTATCGGGA TCGGCTTCAA AGAGATCGAA GTGGGTTTTC CTTCCGCGTC GGCTGTTGAA
TTTCAGTTTG TCAGAACGCT GATCGAGGAA AACCTTATTC CTGACGATGT GACCATACAG
GTCCTGACTC AGGCCAGAGA ACATTTGATT CGTAGAACTT TTGAATCGCT CGAAGGGGCG
AATCGTGCTA TCGTTCATCT CTATAATTCA ACGTCAACCG TTCAGCGCGA CGTTGTGTTC
CGCAAGAACC GCCAGGAGAT CAAGGAGATT GCGATCCGGG GAACCGCACT GGTCCGTGAG
CTCCGCGAGG CTTTCGGCAA CAAAGGGATC CGTTTCCAGT ACAGCCCTGA AAGTTTTACG
GGGACCGAGC TCGAATATGC ACTTGAAGTA TGCCAGGCTG TGATGGAGAC CTGGGGAGCG
TCTGCTGATG AGAAGGTTAT TGTCAACCTT CCGTCTACGG TGGAGATGTC TACACCCAAT
ATTTTCGCTG ACAGGATAGA GTGGTTCTGC CGCAACCTTT CGGACCGTGA TGCTGCCATT
ATCAGTGTCC ATACCCACAA TGATCGGGGA ACGGCCGTTG CTTCCGCCGA ACTGGCCATG
ATGGCCGGCG CCGACAGAGT TGAGGGGGCG CTCTTCGGGA ACGGTGAACG ATGCGGAAAC
CTGGATATTA TTACCATGGC GCTCAATATG TATACGCAGG GTGTCGATTC CAGGCTTGAT
TTTTCAAATC TGACCCATCT GACCGAGGTC TACCGCGAAT GTACCCGCAT GCCTGTCCAT
CCCCGTCATC CGTATGCAGG TGAACTGGTT CATACCGCCT TTTCCGGTTC TCATCAGGAT
GCTATCAATA AAGGGATGAA GGCTCGTACC GAAAGCGAAA ACGAAGTGTG GTGCGTACCC
TATCTGCCGA TTGACCCGAA GGATGTCGGT TTTTCCTACA AGGCGATTGT CAGGATTAAC
AGCCAGTCAG GGAAAGGCGG CGTGGCGTAC GTGATGGAAA AGGAGTTCGG CTACAGTCTT
CCAAAATGGC TGCAGCCGGA TTTTGGCTTG GTGGTTCAGG CAATTGTTGA TCGGGAGGGC
AGGGAACTTT CTCCCGAGGA GATCCGTGAC CTTTTCAGTC GGGAATATGT GCGCCTCGAG
AGACCCTATT TGCTGAAAAA ATGTCATATC AGCTGGGAAG ATGAGGATCC TGATAGAAAC
GACGAGGTCG CTACAACGAT CACAAGTGCG TTGCAGGAGG GCGAACGTGA ATTCGGCTTT
ACCGCGCGAG GAAATGGTCC GGTCGATGCT TTTGTGACGG GATTTATCCA TGATAGCGGG
ATAGACTTCA TCGTCAGCGA GTATTCGGAG CATGCCATCG GTCATGGCGC CGATACGCAG
GCTATTGCCT ATGTCAAGAT TACTCTGCCT GACGGCACTG TCTCCTATGG TGCGGGGATC
GATTCCAATA TCAGTCTGGC TTCGATCAAA GCCGTCATGA GTGCCGTTAA CAGACTCGAT
ACTCAAGCAA AAAAGTAA
 
Protein sequence
MAMMQSSKYA AYPVVDISDR TWPDKRITRA PVWCSIDLRD GNQALPVPMS VQEKIEMFKL 
LIGIGFKEIE VGFPSASAVE FQFVRTLIEE NLIPDDVTIQ VLTQAREHLI RRTFESLEGA
NRAIVHLYNS TSTVQRDVVF RKNRQEIKEI AIRGTALVRE LREAFGNKGI RFQYSPESFT
GTELEYALEV CQAVMETWGA SADEKVIVNL PSTVEMSTPN IFADRIEWFC RNLSDRDAAI
ISVHTHNDRG TAVASAELAM MAGADRVEGA LFGNGERCGN LDIITMALNM YTQGVDSRLD
FSNLTHLTEV YRECTRMPVH PRHPYAGELV HTAFSGSHQD AINKGMKART ESENEVWCVP
YLPIDPKDVG FSYKAIVRIN SQSGKGGVAY VMEKEFGYSL PKWLQPDFGL VVQAIVDREG
RELSPEEIRD LFSREYVRLE RPYLLKKCHI SWEDEDPDRN DEVATTITSA LQEGEREFGF
TARGNGPVDA FVTGFIHDSG IDFIVSEYSE HAIGHGADTQ AIAYVKITLP DGTVSYGAGI
DSNISLASIK AVMSAVNRLD TQAKK