| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0012 |
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| Symbol | secD |
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| ID | 6460744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prosthecochloris aestuarii DSM 271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011059 |
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| Strand | + |
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| Start bp | 13381 |
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| End bp | 15165 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642724004 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_002014725 |
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| Protein GI | 194332865 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.216124 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00885825 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAATA ACAGGTTTAC AGGTATTCTG ATCGTTGCGC TCACCGCACT TGCTCTGTGG
TCCTTATGGC CTACCTATCA GCAGTACTCC TTCAACAAGA AGCTTGAGCC CTTAACGACG
GCTGAAGATA GTCTGAAATT CATTCAGGAG CACCGCCAGG CTATCGACAA TGCAACTGAA
AAAAGCCTCA AGCTGGGACT TGATCTGAAG GGAGGAATGT ATCTTGTACT CGAGGTTGAT
CTGATCGACC TGATTGAACA GCGTGCATGG AACAAGGATC AGACGTTTCG TGATATGCTC
GCGTCGGTCA ATGAGAAGGC TTCGGGTGTC AATACTGGCA TTATCGATCT TCTTGCGGCT
GAATTCCGCG ACAGCGGTAT ACGCATGAGC CGTTATTTTT ACGATGTCCG CGATAGCGAC
GAAGAGGTGA TCGTCAAATT GCGCAAGGAG GCCGAGGAGG CGCTTGCAAG GGCAAGAGAG
GTTATTCGTA ACAGGGTTGA TCAGTACGGT GTCGCCGAGC CTGTTATCCA GACCCAGGGA
GCCAGAAGAA TTATCGTTGC TCTTCCCGGG GTTTCCGATC AGGAAAGGGT CCGCAAGCTC
CTCAAGGGAA CGGCAAAGCT GGAGTTCAAG CTTGTCAGGG ACCGTGAGGC AATGGTTTCT
GCTCTCGAGA GGATCAATAA ACGTATGGCT GAGCGCGAAG CCTCTGCTGC TGACAGCGAG
GGTTTGGTTG CGGATGCCAA TCCGCTCTAC AAACACATCG TTGTCATGGA TAACGGTCGG
GCATATGTGC CGGAATACTC CAGGGAGTAT CTGCTCACGC TTTTTGAGGA TAACGATATT
GTCAATCTGC TTCCCAAAGA TTCGGAACTT CGTCTTTCAG CAAAATCGAT CGAGGGGCAG
GATGGCCAGC AGTTCTATGA TCTTTATCTG ATCAAAAAAA CGCCGGAGCT CACTGGCGGA
GTGATTACCG AAGCCAAAGC GACCTTCGGA GCATCGACTG TGCAGCCTGA GGTCACGATG
AAAATGAATG CAGATGGCAC TGCCAAGTGG GCCCGGATCA CCGGTGCCAA TATTGGTCGT
CAGATCGCCA TTGTGCTTGA CGGCGCGGTC TATTCCGCAC CTGTTGTCGA GTCCAAGATA
CCGGGGGGAA GCTCGGTTAT CAATGGTATC GGCAGTCTTG AAGAGGCTCA GGACCTTGAA
ATTGTGCTCA AGGCGGGTGC GCTGCCTGCG CCTGTCCGTA TCATAGAGGA GCGTACCGTC
GGTCCGTCTC TTGGTGCCGA CTATATCCGT TCAGGTCTTC TGTCTTCCAG CTGGGGACTC
AGTATTGTTG CGGTGTTCAT GATTTTCTAT TATCGCAAAG CCGGGGTTTC GGCTGATATC
GCTCTGGTGC TCAATATTCT TTTCGTTCTT TCGGTACTTG CCGGTTTCGG AGCCGCCTTG
ACCCTGCCGG GTATCGCCGG TCTTGTCCTG ACTATCGGTA TGGCGGTTGA TGCCAACGTG
CTTATTTTTG AGCGCATCAG GGAGGAACTG ATGGAAAAGA AAAATCTGCG TGTAGCGGTT
GATACCGGTT ACAGCAAGGC ATTCTCCGCT ATCATCGATT CGCAAATCAC GACGCTTGGA
GCAGCTTTTC TTCTTTATGT CTATGGTATC GGTCCTATTC AGGGATTTGC TATCACGCTC
ATGATCGGGA CTGCCGCAAG CCTCTTTACG GCACTTGTCG TTACCAAAAG CATCTTTGAT
TTGCTGATCA GCAAAAATCT CATGACAGAG AAAAGTTTCG GATAA
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| Protein sequence | MKNNRFTGIL IVALTALALW SLWPTYQQYS FNKKLEPLTT AEDSLKFIQE HRQAIDNATE
KSLKLGLDLK GGMYLVLEVD LIDLIEQRAW NKDQTFRDML ASVNEKASGV NTGIIDLLAA
EFRDSGIRMS RYFYDVRDSD EEVIVKLRKE AEEALARARE VIRNRVDQYG VAEPVIQTQG
ARRIIVALPG VSDQERVRKL LKGTAKLEFK LVRDREAMVS ALERINKRMA EREASAADSE
GLVADANPLY KHIVVMDNGR AYVPEYSREY LLTLFEDNDI VNLLPKDSEL RLSAKSIEGQ
DGQQFYDLYL IKKTPELTGG VITEAKATFG ASTVQPEVTM KMNADGTAKW ARITGANIGR
QIAIVLDGAV YSAPVVESKI PGGSSVINGI GSLEEAQDLE IVLKAGALPA PVRIIEERTV
GPSLGADYIR SGLLSSSWGL SIVAVFMIFY YRKAGVSADI ALVLNILFVL SVLAGFGAAL
TLPGIAGLVL TIGMAVDANV LIFERIREEL MEKKNLRVAV DTGYSKAFSA IIDSQITTLG
AAFLLYVYGI GPIQGFAITL MIGTAASLFT ALVVTKSIFD LLISKNLMTE KSFG
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