| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MARTH_orf396 |
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| Symbol | vacB |
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| ID | 6418432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Mycoplasma arthritidis 158L3-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011025 |
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| Strand | + |
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| Start bp | 354343 |
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| End bp | 356499 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 4 |
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| GC content | 31% |
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| IMG OID | 642715527 |
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| Product | VacB-like exoribonuclease II |
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| Protein accession | YP_001999965 |
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| Protein GI | 193216723 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCCGA AAAAAAGATT TAATAACAAA CCAAACACCA TCAACATAAA AGAAGAAGAC
GTTTTAAATT TAATTAAAAA GTTTAAAACG CTTTCTTTTC TTAAAATCGC CAAAGAACTT
AAACTGAAAT CCTGCGATAA TCATTATTTA ACGAAATTTT TATATTCACT TTTAGATGCT
AATAAAATTG ACAAAACCAA AAATGGTGAT TTTTATCTTT TAAATTATGT TTGTGAAGTT
GAAAATCAAA TTTCAATCAC TAACAAAAGA CTTGGTTTTA TTGACCTAGA TAATGCTTTA
GAAACCAATA ACGACGAAAA TAAATGTAGC GCATTTGTGG CGCCATTTCA ACTTAAAAAC
GTCTTAGATA AAGATCTTGT ACAAGCAAAA ATCTATTCAT ACCAAGACGA AAATAATAAA
ACATTATACA AAGGCGTAAT TAGCAATGTA ATCAAACACA ATTGCAAAAA TATTATTGGA
TTCATTGAAT TTAAAGAAAA TAGGCCAATT TTTAACGCCT TTGACGAACG AAATAAAGCT
AACTTTTTCT TTATTAATAC TAGTAATTTC CCCAAGATTA TTAAAAGCAC TGATTTAGTA
AAATGTATTA TTCTTGAGCC TAACGCAAAA TCAGTTGCAA TTGCTTTTGA CTCAATTATC
ACTAATCTTA ATGATAAAAA TTATGTAATT AAAAAAATTA TGGCGGCGAA TGATGTCAAA
GGCGGCTTTG GTCTAGAAGT TCTAGAAAAA GCAGCTACTA TTCCTCAAGA AATTATTCCT
GAGGATTATG ATAATCGAGT TGATCTCACT TCTTTACTGA CAGTTACCAT TGATGGCTTA
GATACTAAGG ACTTTGATGA CGCAATTTCT TGTAGTAAAT TAGAAAATGG CAATTACAAA
TTGTTCATTC ATATTGCTGA TGTTTCACAT TACGTTAAAG AAGGCGATGC CATTGATAAA
GAGGCACTAG AACGAGGCAC AAGTATTTAC TTGCCGGATA AAGTAATTCC GATGCTTCCT
TTTGCTTTAT CAAATGGTAT TTGCTCACTT AACCCCAATG TAATACGAGC CTGTCTAACC
TTAGAGCTTG AACTAGATAA CCATGGCAAG AATGTTAGTT CAAAAGTTTA TGCAAGTTTA
ATCAAATCAG ATTATCGTTT AACTTATAAT GAAGTAAATG ATTTCTTTAA TCAAAAAATT
GAAGTTCCTA ACGAGATTAA TAATCTTCTT AGTCGTGCTA GAGAAATATC AAAGATTCTA
AGAGCTAAAA AAATCAAAGA TGGTTATGTG GATTTCGAAA TTGAAGAGCC TAAAATCATC
ATGGAAGACA ATGATATTAA GGATATTGTC ATAAGAAAAG ATGGCGAAGC AGAAAAGTTA
ATTGAAGATT TCATGGTGAG GGCTAATGAA ACTATTGCTG AAATGATGAA AGAGTTGAAG
ATTCCCTCAA TCTATCGTAT TCATGATAAG CCTGAAACCT TAAAACTTAG TGCCTTACAA
GAGCTTCTTG GTTTTGTCGG TATGAAAAAT ATTCAAGTTC CATTTGATGG CTCTCCTAAA
TCTTTTGAAA TAATGGTTAA TAAAATTAAA GCCATTAAAT TAGATGACTA TTTAAAAATG
GCATTGCTAA GAACAATGCA AAAAGCCCAA TACTCTTCTA ATAATATTGG TCATTTTGGT
CTTGCTTCAA GTGCTTATTC ACATTTTACT AGCCCCATTA GAAGATATCC TGACTTGCTA
TTACATCGCT TAATTAGAAA ATATATTCTT AACGGAAAAT TTGATCCCAA AAACTACGAG
AAAGTTAAAG ATGAAATCGA AGCCATTGCC CAAATGAATA GCGAAGCGGA AAAAACTGCT
ATGACAGTGG AACGTAGTGT TGTTGATGTG ATGAAAAGCA AATTCTTTGA AAAATTTATT
AATAAAACTT TCGTCGCGCA ATTAGTAAGT ATTGAAAAAT TCGGAGCATT TTTTAATATT
GAAGAGTATC AAGCGAGCGT ACTTATAAGA TTCGAAGATG ACGAAGATGG CTTAATTAAG
ATATCAAGTT ACGAAGCTAA AGGTAAAAGC AAAACTTTAA AAGTAGGTAG TGAATATAAA
ATTGCCATTA CTTCGATTGA TCATGAAAAA GGCAATATCA ACGCCAAATT AGTTTAA
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| Protein sequence | MFPKKRFNNK PNTINIKEED VLNLIKKFKT LSFLKIAKEL KLKSCDNHYL TKFLYSLLDA
NKIDKTKNGD FYLLNYVCEV ENQISITNKR LGFIDLDNAL ETNNDENKCS AFVAPFQLKN
VLDKDLVQAK IYSYQDENNK TLYKGVISNV IKHNCKNIIG FIEFKENRPI FNAFDERNKA
NFFFINTSNF PKIIKSTDLV KCIILEPNAK SVAIAFDSII TNLNDKNYVI KKIMAANDVK
GGFGLEVLEK AATIPQEIIP EDYDNRVDLT SLLTVTIDGL DTKDFDDAIS CSKLENGNYK
LFIHIADVSH YVKEGDAIDK EALERGTSIY LPDKVIPMLP FALSNGICSL NPNVIRACLT
LELELDNHGK NVSSKVYASL IKSDYRLTYN EVNDFFNQKI EVPNEINNLL SRAREISKIL
RAKKIKDGYV DFEIEEPKII MEDNDIKDIV IRKDGEAEKL IEDFMVRANE TIAEMMKELK
IPSIYRIHDK PETLKLSALQ ELLGFVGMKN IQVPFDGSPK SFEIMVNKIK AIKLDDYLKM
ALLRTMQKAQ YSSNNIGHFG LASSAYSHFT SPIRRYPDLL LHRLIRKYIL NGKFDPKNYE
KVKDEIEAIA QMNSEAEKTA MTVERSVVDV MKSKFFEKFI NKTFVAQLVS IEKFGAFFNI
EEYQASVLIR FEDDEDGLIK ISSYEAKGKS KTLKVGSEYK IAITSIDHEK GNINAKLV
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