| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5313 |
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| Symbol | |
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| ID | 6413014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 5733615 |
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| End bp | 5735465 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642715202 |
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| Product | ATP-dependent DNA helicase RecQ |
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| Protein accession | YP_001994274 |
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| Protein GI | 192293669 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGCTC CGGTTTCGCG CCACACCGAC GACGACCTCG ACGCCCGGGC GCTGTCGGTT
CTCAACCACG TGTTCGGGCT GCCGTCGTTC CGCGGCCAGC AGGAAGCGAT CGTGCGGCAT
GTCGCCGATG GTGGCGATGC GCTGGTGTTG ATGCCGACCG GCGGCGGCAA GTCGCTGTGC
TACCAGCTGC CGGCGCTGCT GCGCGAGGGC TGCGGCGTGG TGGTGTCGCC GCTGATCGCG
CTGATGCGCG ACCAAGTCGC CGGACTGCTG GAGAGCGGCG TGCGCGCCGC CGCACTGAAT
TCGACGCTGT CCTACGACGA AGCCAACGAC ATCGAGCAGC AATTGCTCAA AGGCGAGCTC
GATCTGCTCT ACGTCGCGCC CGAGCGACTG CTGACGCCGC GCTGCCTGTC GCTGCTGGCC
CGCGCCAAAA TCTCGCTGTT CGCGATCGAC GAGGCGCATT GCGTCTCGCA ATGGGGCCAC
GACTTCCGAC CCGAATATGT CGGGCTCTCG GCCATCGCCG AGAAGTTCCC CAATGTGCCG
CGGATCGCGC TGACCGCGAC CGCCGATGCG CTGACCCGCC GGGAGATCGC CGAGCGGTTG
TCGCTGACGG ACGCGCCGTG CTTCGTCTCC AGCTTCGATC GGCCGAACAT CCGCTACAGC
ATCGTCGACA AGCAGAACGC GCCGGCGCAG CTCAAGGCGT TCATCGACGA CCGCCATCGC
GGCCATTCCG GCGTGGTGTA TTGCCTGTCC CGCGCCAAGG TCGAGGACAT TGCCGAGACG
CTGAGCAAAT CCGGCCTCAC CGCGCTGCCC TATCATGCCG GCCTGCCCGC CGAGATCCGC
GCCCGCAATC AGGACCGTTT CCTGAACGAG GACGGCGTGG TGATCGTCGC CACCATCGCG
TTCGGCATGG GGATCGACAA GCCGGACGTG CGCTTCGTCG CCCATCTCGA TCTGCCCAAG
AGCATCGAGG CCTATTACCA GGAGACCGGT CGCGCCGGCC GCGACGGCAA GCCGTCCGAT
GCCTGGATGG CCTACGGGCT ATCGGACATC GTGCAGCAGC GCCGGATGAT CGACGAGAGC
AGCGGCTCCG ACGCATTCAA ACGTGTTTCG ATGGGCAAGC TGGATGCGCT GGTCGGCTTG
TGCGAGTCCA CCGGCTGCCG CCGCACCCGG CTGCTCGGCT ATTTCGGCGA GACGGCGCAG
CACGAGAGCT GCGGCAATTG CGACAACTGC CTGACCCCGC CGAAGGTGAT CGACGGCACG
GTCGCCGCAC AGAAGTTGTT GTCCTGCGCC TACCGCACCG GCCAGCGGTT CGGCGCCCAA
CACCTGATCG ATGTGCTGCT CGGGCGGCTG ACCGATCGAG TCACTCAGTT CGGCCACGAC
AAACTGTCGG TGTTCGGCAT CGGCGGCGAG TTCAACGAAA AGCAATGGCG CGCGGTGATC
CGCCAACTGG TGTCGCTCGG CCACCTAGCG CCGGACAGCG AGGCGTTCGG CGCGCTGAAG
CTGACCGAGA CCTCGCGCGC GGTGCTAAAG GGCGAGTCCG AGGTGGCGCT GCGCGAGCAG
GCCGGACGCC CGCCGCGGTC GAAATCGCGC CGCGGCGATC TGGTCGGCGG CGCCCAGCGC
GAGACCAGCG GCGATCCGGC GCTGTTCGCG GCCCTGAAGG CATGGCGATC CGAGGTGGCG
AAGGCCCGTG GCGTGCCGGC CTATGTGGTA CTGCACGATG CCACCCTCGA TAGCCTTGCG
GCCGCAAAGC CGCGGACACT GGACGAACTG CGCGGGATTG CTGGGATCGG TGACAAGAAG
CTCGAGCATT ACGGCGCCGC GCTGCTGGCG GTGATCGGCG AACGGCGCTA G
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| Protein sequence | MIAPVSRHTD DDLDARALSV LNHVFGLPSF RGQQEAIVRH VADGGDALVL MPTGGGKSLC
YQLPALLREG CGVVVSPLIA LMRDQVAGLL ESGVRAAALN STLSYDEAND IEQQLLKGEL
DLLYVAPERL LTPRCLSLLA RAKISLFAID EAHCVSQWGH DFRPEYVGLS AIAEKFPNVP
RIALTATADA LTRREIAERL SLTDAPCFVS SFDRPNIRYS IVDKQNAPAQ LKAFIDDRHR
GHSGVVYCLS RAKVEDIAET LSKSGLTALP YHAGLPAEIR ARNQDRFLNE DGVVIVATIA
FGMGIDKPDV RFVAHLDLPK SIEAYYQETG RAGRDGKPSD AWMAYGLSDI VQQRRMIDES
SGSDAFKRVS MGKLDALVGL CESTGCRRTR LLGYFGETAQ HESCGNCDNC LTPPKVIDGT
VAAQKLLSCA YRTGQRFGAQ HLIDVLLGRL TDRVTQFGHD KLSVFGIGGE FNEKQWRAVI
RQLVSLGHLA PDSEAFGALK LTETSRAVLK GESEVALREQ AGRPPRSKSR RGDLVGGAQR
ETSGDPALFA ALKAWRSEVA KARGVPAYVV LHDATLDSLA AAKPRTLDEL RGIAGIGDKK
LEHYGAALLA VIGERR
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