| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5280 |
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| Symbol | |
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| ID | 6412981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 5696916 |
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| End bp | 5697920 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642715170 |
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| Product | cytochrome d ubiquinol oxidase, subunit II |
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| Protein accession | YP_001994242 |
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| Protein GI | 192293637 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1294] Cytochrome bd-type quinol oxidase, subunit 2 |
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| TIGRFAM ID | [TIGR00203] cytochrome d oxidase, subunit II (cydB) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.797585 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTATG ACATCGCGAC GATCTGGGCT TTCATCATCG CCTTTGCGGT GTTCGTCTAT
GTGGTGATGG ACGGCTTCGA CCTCGGGCTC GGCATTCTGT TTCCGCTGTT TCGGGCCAAG
CGCGATCGCG ACGTGATCAT GAATAGCGTC GCCCCGGTGT GGGACGGCAA CGAGACCTGG
CTGGTGCTCG GCGGTGGTGG CCTGTTCGCG GCATTCCCGC TGGCCTATGC GGTGCTAATG
CCGGCGCTGT ACACGCCGAT CATCGCTATG TTGCTCGGGC TGGCGTTTCG CGGCGTCGCG
TTTGAATTCC GCTGGCGGAC CCAGCGCGAG CGCAATCGCT GGGACGTCGC GTTCTTCCTC
GGCTCGCTGG TGGCCACGCT GGCGCAGGGC GTCGCGCTCG GCGCGCTGCT GCAGGGCGTT
CACGTCGAAG GCCGCGCCTA TGCGGGCGGC TGGTGGGATT GGCTGACGCC GTTCAGCCTG
CTCACCGGCG TCGCGCTGGT GATCGGCTAC GCTTTGCTCG GCGCAACCTG GTTGGTGATG
AAAACCACCG GTGACCTGCG GGACACCGCG TATCGGCTGA GCCGCTGGCT ACTGCTCGCC
CTGCTCGTGG CGATTGTCGC CGTCAGCGCC GCGACGCCGT TCCTGAGTTA CGATTACTCG
CAGCGCTGGT TCGCCTGGCC GAACGTTCTC GCCACTGCGC AGGTGCCGCT CGCCGTCGCC
ATCGTCACCG CGCTGCTGCT GCGCGCGCTG GCGCAGCGCC GCGACTACCA GCCGTTCCTG
CTGACGCTGT GCCTGTTCGC GCTGTCCTAT GCGGGTCTCG GCATCAGCCT GTGGCCCTAT
GTGGTGCCAC GGAGCATCAC CATCTGGCAG GCGGCTGCGC CGGAGAACAG CCAACTGTTC
ATGCTGGTCG GCGTCGCCAT CCTGGTGCCG ATCATCCTCA CCTACACCGC GTGGGCCTAT
TGGGTGTTTC GCGGCAAGGT CGATCCGGAG AGCGGCTATC ATTGA
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| Protein sequence | MAYDIATIWA FIIAFAVFVY VVMDGFDLGL GILFPLFRAK RDRDVIMNSV APVWDGNETW
LVLGGGGLFA AFPLAYAVLM PALYTPIIAM LLGLAFRGVA FEFRWRTQRE RNRWDVAFFL
GSLVATLAQG VALGALLQGV HVEGRAYAGG WWDWLTPFSL LTGVALVIGY ALLGATWLVM
KTTGDLRDTA YRLSRWLLLA LLVAIVAVSA ATPFLSYDYS QRWFAWPNVL ATAQVPLAVA
IVTALLLRAL AQRRDYQPFL LTLCLFALSY AGLGISLWPY VVPRSITIWQ AAAPENSQLF
MLVGVAILVP IILTYTAWAY WVFRGKVDPE SGYH
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