Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_5279 |
Symbol | |
ID | 6412980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 5695490 |
End bp | 5696896 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642715169 |
Product | cytochrome bd ubiquinol oxidase subunit I |
Protein accession | YP_001994241 |
Protein GI | 192293636 |
COG category | [C] Energy production and conversion |
COG ID | [COG1271] Cytochrome bd-type quinol oxidase, subunit 1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.332035 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGAAA GTCTTGATCC GGTGGTGCTG GCGCGCCTCC AGTTCGCCTT CACAGTTTCG TTTCACATCA TCTTCCCAGC CTTTTCGATC GGCCTTGCGA GCTATCTCGC TGTGCTCGAA GCGCTGTGGC TGTGGACCAA GCGCGAAGTC TTCATCAACC TGTTCAATTA CTGGATGAAG ATCTTCGCCA TCGCGTTCGG CATGGGCGTG GTGTCGGGCA TCGTGATGTC CTACCAGTTC GGCACCAACT GGGCGGTGTT CTCCGACAAG ACCGGTCCGG TGCTCGGCCC GCTGATGGCC TATGAGGTGC TGACCGCGTT CTTCCTCGAG GCGGGATTCC TCGGCGTCAT GCTGTTCGGC CTCAAGCTGG TGGGACCGCG GCTGCACTTC CTCGCCACGC TGATGGTCGC GATCGGCACG CTGACCTCGG CGTTCTGGAT TCTGTCGGCA AATTCCTGGA TGCAGACTCC GACCGGTTAC GCCGTCAACG ACGTCGGGCA ATTCATCGCG GTCGACTGGT TCAAGCTGAT CTTCAATCCG TCGTTTCCGT ATCGCCTCAC GCATATGGTT CTGGCCGCCT ATCTCACCAC TGCGCTCGTG GTGGGCTCGG TCGGCGCCTA TCATCTGCTG AGCAACACCC GGCAGCCCGG CGCGCGGATG ATGTTCTCGA TGGCGATGTG GATGATCGCC GTGGTGGCAC CGATCCAGAT CTTCGCCGGC GACGCGCACG GCCTCAATAC GCTGGAGCAC CAGCCCGCCA AGGTGATGGC GATGGAAGGC CACTACCAGA GCCATCCAGA CGGCGCGCCG CTGATCCTGT TCGGCCTGCC TGATCAGGAC GCCGCGGTGG TGCGCTACGC GCTGCAGATT CCGAAACTGT CGTCGTTGAT CTTGAAGCAC TCACTCGATG CGCCGCTCGC CGGCCTCGAC ACTGTGCCGC GTGAAAACTG GCCGCCGGTG CCGATCACCT TCTGGTCCTT CCGTGTGATG GTCGCGCTCG GCTTCCTGAT GCTTGGCCTC GGCGTGTTCA GCCTGTGGCT GCGCTGGCGC GGCCGGCTGT TCGAATCCCG GCCATTGCAC CGCTTCGCGC TGGCGATGGG CCCGGCCGGC TTCATCGCCG TACTGGCCGG CTGGGTGACC ACCGAAACCG GACGGCAGCC GTTCACCGTG TTCGGCCTGC TGCGCACCGT CGACTCGGTG TCGCCGCTGG CCGCTCCGGC GGTGGCCACG TCGCTGATCG CCTTCATCCT GGTGTATTTC GCCATCTTCA TCGCAGGGGT GGTCTACATC CTGCGGCTGA TGGCGCATCC GCCGCACCCT GGCGAGGAAG GCCCGCGCGG CGATACGCCC GAACGTGCCG CCGGCATTAC GCCGGCGCCG GCGATCGCCA CCCGCAGATT CAGTTGA
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Protein sequence | MFESLDPVVL ARLQFAFTVS FHIIFPAFSI GLASYLAVLE ALWLWTKREV FINLFNYWMK IFAIAFGMGV VSGIVMSYQF GTNWAVFSDK TGPVLGPLMA YEVLTAFFLE AGFLGVMLFG LKLVGPRLHF LATLMVAIGT LTSAFWILSA NSWMQTPTGY AVNDVGQFIA VDWFKLIFNP SFPYRLTHMV LAAYLTTALV VGSVGAYHLL SNTRQPGARM MFSMAMWMIA VVAPIQIFAG DAHGLNTLEH QPAKVMAMEG HYQSHPDGAP LILFGLPDQD AAVVRYALQI PKLSSLILKH SLDAPLAGLD TVPRENWPPV PITFWSFRVM VALGFLMLGL GVFSLWLRWR GRLFESRPLH RFALAMGPAG FIAVLAGWVT TETGRQPFTV FGLLRTVDSV SPLAAPAVAT SLIAFILVYF AIFIAGVVYI LRLMAHPPHP GEEGPRGDTP ERAAGITPAP AIATRRFS
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