| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5279 |
|---|
| Symbol | |
|---|
| ID | 6412980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 5695490 |
|---|
| End bp | 5696896 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642715169 |
|---|
| Product | cytochrome bd ubiquinol oxidase subunit I |
|---|
| Protein accession | YP_001994241 |
|---|
| Protein GI | 192293636 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1271] Cytochrome bd-type quinol oxidase, subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.332035 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAAA GTCTTGATCC GGTGGTGCTG GCGCGCCTCC AGTTCGCCTT CACAGTTTCG
TTTCACATCA TCTTCCCAGC CTTTTCGATC GGCCTTGCGA GCTATCTCGC TGTGCTCGAA
GCGCTGTGGC TGTGGACCAA GCGCGAAGTC TTCATCAACC TGTTCAATTA CTGGATGAAG
ATCTTCGCCA TCGCGTTCGG CATGGGCGTG GTGTCGGGCA TCGTGATGTC CTACCAGTTC
GGCACCAACT GGGCGGTGTT CTCCGACAAG ACCGGTCCGG TGCTCGGCCC GCTGATGGCC
TATGAGGTGC TGACCGCGTT CTTCCTCGAG GCGGGATTCC TCGGCGTCAT GCTGTTCGGC
CTCAAGCTGG TGGGACCGCG GCTGCACTTC CTCGCCACGC TGATGGTCGC GATCGGCACG
CTGACCTCGG CGTTCTGGAT TCTGTCGGCA AATTCCTGGA TGCAGACTCC GACCGGTTAC
GCCGTCAACG ACGTCGGGCA ATTCATCGCG GTCGACTGGT TCAAGCTGAT CTTCAATCCG
TCGTTTCCGT ATCGCCTCAC GCATATGGTT CTGGCCGCCT ATCTCACCAC TGCGCTCGTG
GTGGGCTCGG TCGGCGCCTA TCATCTGCTG AGCAACACCC GGCAGCCCGG CGCGCGGATG
ATGTTCTCGA TGGCGATGTG GATGATCGCC GTGGTGGCAC CGATCCAGAT CTTCGCCGGC
GACGCGCACG GCCTCAATAC GCTGGAGCAC CAGCCCGCCA AGGTGATGGC GATGGAAGGC
CACTACCAGA GCCATCCAGA CGGCGCGCCG CTGATCCTGT TCGGCCTGCC TGATCAGGAC
GCCGCGGTGG TGCGCTACGC GCTGCAGATT CCGAAACTGT CGTCGTTGAT CTTGAAGCAC
TCACTCGATG CGCCGCTCGC CGGCCTCGAC ACTGTGCCGC GTGAAAACTG GCCGCCGGTG
CCGATCACCT TCTGGTCCTT CCGTGTGATG GTCGCGCTCG GCTTCCTGAT GCTTGGCCTC
GGCGTGTTCA GCCTGTGGCT GCGCTGGCGC GGCCGGCTGT TCGAATCCCG GCCATTGCAC
CGCTTCGCGC TGGCGATGGG CCCGGCCGGC TTCATCGCCG TACTGGCCGG CTGGGTGACC
ACCGAAACCG GACGGCAGCC GTTCACCGTG TTCGGCCTGC TGCGCACCGT CGACTCGGTG
TCGCCGCTGG CCGCTCCGGC GGTGGCCACG TCGCTGATCG CCTTCATCCT GGTGTATTTC
GCCATCTTCA TCGCAGGGGT GGTCTACATC CTGCGGCTGA TGGCGCATCC GCCGCACCCT
GGCGAGGAAG GCCCGCGCGG CGATACGCCC GAACGTGCCG CCGGCATTAC GCCGGCGCCG
GCGATCGCCA CCCGCAGATT CAGTTGA
|
|---|
| Protein sequence | MFESLDPVVL ARLQFAFTVS FHIIFPAFSI GLASYLAVLE ALWLWTKREV FINLFNYWMK
IFAIAFGMGV VSGIVMSYQF GTNWAVFSDK TGPVLGPLMA YEVLTAFFLE AGFLGVMLFG
LKLVGPRLHF LATLMVAIGT LTSAFWILSA NSWMQTPTGY AVNDVGQFIA VDWFKLIFNP
SFPYRLTHMV LAAYLTTALV VGSVGAYHLL SNTRQPGARM MFSMAMWMIA VVAPIQIFAG
DAHGLNTLEH QPAKVMAMEG HYQSHPDGAP LILFGLPDQD AAVVRYALQI PKLSSLILKH
SLDAPLAGLD TVPRENWPPV PITFWSFRVM VALGFLMLGL GVFSLWLRWR GRLFESRPLH
RFALAMGPAG FIAVLAGWVT TETGRQPFTV FGLLRTVDSV SPLAAPAVAT SLIAFILVYF
AIFIAGVVYI LRLMAHPPHP GEEGPRGDTP ERAAGITPAP AIATRRFS
|
|---|
| |