| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5270 |
|---|
| Symbol | |
|---|
| ID | 6412971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5683483 |
|---|
| End bp | 5684877 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642715160 |
|---|
| Product | OmpA/MotB domain protein |
|---|
| Protein accession | YP_001994232 |
|---|
| Protein GI | 192293627 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGAC TTTACAGCTC CAGCGGTAAA TGGTGGCCCG GCGCCATTCC GTTGGTTATC
CTCTGGGCTA TCGCCGCTTG GACGACGATG CCGGCCGTGG AAGCCGATCT TGGCGCTCGC
GCCACGGCCG TGCTCAAGGA CACCGTCCTC GACAAAACGA AGATCACCGC AGCGGGCCGC
GACATCACGC TGACCGCCGA GGCGTTCTCC GAGGAAGGGC GCCGCGCCGC GGTGTCCGCG
GTCGAGGCTG TGCCGGGCCT CCGTTTGGTG AACGACCGGA CCAAGCTGGT ACCGGAAGCC
TCTCCTTATG TCTGGTCAAT TGAGCGCGAT GTCGTCCGCG TGACCCTGAC CGGCAGCGCG
CCGCTGCCGG CGAGCCGCAC CCGGCTGGCC GACGGCGCGC GGGCGGCGGT GAACGGCACC
GAAGTGGTCG ACCGGATGGC GCTGGCGCGC GGTGCGCCGC AACGGTTCGA CGCCGCCGCG
ATGCTGCTGA TCGACCAGAT CGCCAAGTTG AAGCAGGGCA AGATCACCCT CACCGGCACC
CAGGTCGCCC TGAAGGGCAT GGCCAAGGAT CTCGGCGGCC GTGAATCGAT CGCCGCGGCG
CTGCGCACCC TTCCCGACGG TTATACCGTT GGCGAAAACG ATATCGAGGC GCCGCCTTAC
GTGTTCCGCG CCTACAAGGA CCCGGTCGCC GGGCAGGTCA CGCTCGACGG CTATGTGCCG
GACAACAATG TCCATGCGGC GCTGGCCGCA GCCACTGGCC GCAAATTCTT CAACGAAAAG
GTGGTCGACA ACCTCAAGGC GAGCGTTGGC GCCCCGAAGG GCTTCCTCGA AGCCGCAACG
CCGGCGCTTG GCGCACTGTC GCGGCTGTCG ACCGGCACCC TGGTACTGTC GGACCGAGAG
GTTCATCTGT CCGGCGACGC GCTTTACGAG GTCGCCGCCA ACCAGATCCG CGGCGGTCTG
AACAAGGAGC TGCCGCAAGG CTGGACCGTG AAGGCCGATC TGTCGGTCAA GCCAGCCGCC
GCGCCGGTCG ACGCCTCGGT GTGCCAGCAA TTGTTCAACG GGCTGCTGGC CAAGGCCACC
ATCCAGTTCG AATCCGCCAG CGCCAGCATC GACAAGGATT CCGCCGCGCT GCTCGATCGG
CTGATCGAAA CCGCGATGCG CTGCCCGAAC GCCAAGATCG AAGTCGCCGG CCACACCGAC
AGCGACGGTG ACCCCGCGTT CAACCAGTCG TTGTCGGAAA AGCGCGCCCG CGAGGTGGTC
GACTATATGG TGCGGGCGGG CCTGTCGCCG GAGCGTCTCC AGGCATTCGG CTACGGCAGC
AAGATCCCCG TCGCCGGCAA CGACACCGAC GCTGGCAAGG CGAAGAATCG CCGGATCGAT
TTCGTGGTCA GGTGA
|
|---|
| Protein sequence | MRGLYSSSGK WWPGAIPLVI LWAIAAWTTM PAVEADLGAR ATAVLKDTVL DKTKITAAGR
DITLTAEAFS EEGRRAAVSA VEAVPGLRLV NDRTKLVPEA SPYVWSIERD VVRVTLTGSA
PLPASRTRLA DGARAAVNGT EVVDRMALAR GAPQRFDAAA MLLIDQIAKL KQGKITLTGT
QVALKGMAKD LGGRESIAAA LRTLPDGYTV GENDIEAPPY VFRAYKDPVA GQVTLDGYVP
DNNVHAALAA ATGRKFFNEK VVDNLKASVG APKGFLEAAT PALGALSRLS TGTLVLSDRE
VHLSGDALYE VAANQIRGGL NKELPQGWTV KADLSVKPAA APVDASVCQQ LFNGLLAKAT
IQFESASASI DKDSAALLDR LIETAMRCPN AKIEVAGHTD SDGDPAFNQS LSEKRAREVV
DYMVRAGLSP ERLQAFGYGS KIPVAGNDTD AGKAKNRRID FVVR
|
|---|
| |