| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5242 |
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| Symbol | |
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| ID | 6412942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5653057 |
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| End bp | 5654673 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642715132 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001994205 |
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| Protein GI | 192293600 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAGCG TGACGAGCGT GTCGTGGTGG GCGGCGGGTG TGCTGTACCA GATCTATCCG
CGCTCGTTTC AGGACAGCAA CAACGACGGC ATCGGTGATC TGCGCGGGAT CATCGATCGG
CTCGGCTATC TGTCCGATCT CGGCGTCGAC GCGATCTGGC TGTCTCCGAT CTTTCCGTCA
CCGATGGCGG ACTTCGGCTA CGATGTCGCC GACTATGTCG GCATCGATCC AATCTTCGGC
ACGATGGACG ATTTCGACGC GCTGGTGCTC ACGGCCCATG CCCGCGGGCT CAAGGTCATT
CTCGATCTGG TGCCGAACCA TTCATCCGAA CAGCATCCCT GGTTCGTCGA GAGCCGGTCG
TCGCGGCACA ATCCCAAGCG CGATTGGTAC ATCTGGCGCG ACCCAGCCCC GGACGGCGGA
CCGCCGACGA ATTGGCTGTC GGAATTCGGC GGCAGCGGCT GGGAGTACGA CGACGCCACC
GGCCAATACT ACTATCACGC CTTTCTGAAG CAGCAGCCGG ACCTCAACTG GCGTAATCCG
GAAGTGCGGG CCGCGATCTA TGACGCGATG CGGTTCTGGC TGCGGAAGGG CGTCGATGGC
TTCCGGGTCG ACGTGATCTG GCACCTGATC AAGGACGACC AATTTCGCGA CAACCCGCCC
AATCCGGATT TTCGCCCCGG CATGCCGCCG CACGCCGCGC TGATCCCGAT TTACTCCGCG
GATCGGCCGG AGACGTTGGA GGTGGTTGCC GAACTGCGCC GTGTCGTCGA CGAATTCGAT
CATCGGCTGC TGATCGGCGA GATCTATCTG CCGGTGGAGC GGCTGGTCGC GTATTACGGA
GCGGAGCTGA AGGGCGCGCA GCTGCCGTTC AACTTCGCGC TGCTGTCGAC GCCGTGGCGT
GCCCGGGAGA TTGCGGCGCT GATCGATCGC TACGAGCAGG CATTGCCGGC CGGCGCGTGG
CCGAACTGGG TGCTGGGCAA TCACGACCGG CCGCGGGTGG CGAGCCGGGT CGGGCCGGCA
CAGGCCCGCG TCGCCGCGAT GCTGTTGCTC ACACTGCGGG GCACCCCGAC GATGTATTAC
GGCGACGAGC TTGGCATGGA GCAGGTCGAG ATCGCGCCCG AGGACGTGCA GGATCCGTTC
GAGAAGAACG TGCCCGGCAT CGGTGTCGGC CGCGATGGCT GCCGCACGCC GATGCAGTGG
GACGCGTCGG ACAACGCCGG GTTCTCGGAT GTCCGGCCGT GGCTCCCGCT GGCCCCGAAC
GCCACCCAGG ACAACGTCGC TAATCTGCGC GCTGACGCGC AGTCGATCCT AAACCTCTAT
CGCGCTCTGC TGCGGCTACG GCGCGCACTG CCCCAGCTCG CGCTTGGCGA GTATCAGCCA
CTCGCCGCGG AGGGCGAGCT GTTGCTGTAT CGTCGGCATC ATCAGGGGCG GTCGGTCTTG
GTGGCGCTCA ATCTCGGCCC GGATCCGATC TCGGCGGCGT CCGACGCGAT CGGGCTAGAC
GGCGAGGTGC TGCTGTCGAC CATGCTCGAC CGCGCCGGCG AACGCATCGG TGCCACGCTC
GACCTGCGCG GCAGCGAAGG CATCATCGTC GGCCGGGCGC CGGAGGACCT CGTTTAG
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| Protein sequence | MESVTSVSWW AAGVLYQIYP RSFQDSNNDG IGDLRGIIDR LGYLSDLGVD AIWLSPIFPS
PMADFGYDVA DYVGIDPIFG TMDDFDALVL TAHARGLKVI LDLVPNHSSE QHPWFVESRS
SRHNPKRDWY IWRDPAPDGG PPTNWLSEFG GSGWEYDDAT GQYYYHAFLK QQPDLNWRNP
EVRAAIYDAM RFWLRKGVDG FRVDVIWHLI KDDQFRDNPP NPDFRPGMPP HAALIPIYSA
DRPETLEVVA ELRRVVDEFD HRLLIGEIYL PVERLVAYYG AELKGAQLPF NFALLSTPWR
AREIAALIDR YEQALPAGAW PNWVLGNHDR PRVASRVGPA QARVAAMLLL TLRGTPTMYY
GDELGMEQVE IAPEDVQDPF EKNVPGIGVG RDGCRTPMQW DASDNAGFSD VRPWLPLAPN
ATQDNVANLR ADAQSILNLY RALLRLRRAL PQLALGEYQP LAAEGELLLY RRHHQGRSVL
VALNLGPDPI SAASDAIGLD GEVLLSTMLD RAGERIGATL DLRGSEGIIV GRAPEDLV
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