| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5216 |
|---|
| Symbol | |
|---|
| ID | 6412916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5628061 |
|---|
| End bp | 5628786 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642715106 |
|---|
| Product | protein of unknown function DUF218 |
|---|
| Protein accession | YP_001994179 |
|---|
| Protein GI | 192293574 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1434] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.496773 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTGT CGCCCGATCG CAACCCGATC TCCCCGTCGT CTGACCGGCC GGTCCGACGC
GGCGGGCGGC TGCGCGCGAC CATCGTGGCG GTGCTGGCGC TCGGCTTCCT CGTCGGTGCG
GGTGGCTTCG TGGTGTTTCT GTCGCAACTG CGCGGCGCCG AGCAGAAGCC GCGACACAAC
GCCGACGGCA TCGTGGTGTT GACCGGCGGC TCGTCGCGGG TGTCGGACGC GGTGGAATTG
CTGGCGGCCG GCTACGGCAA GCGGCTGTTG ATCTCCGGCG TTCACCGCAC CAATGGCGCC
CGCGACATTT CACGCTCGGT GCCGGAGAGC CGCGACTGGT TCAGTTGCTG CGTTGATCTC
GACCGCTCTG CAGTCGATAC CCGCAGCAAT GCCTCCGAAA CCCGGCGCTG GGTGCAGGAG
CGCGGCTTCC GCTCGCTGAT CGTGGTGACG TCGAATTACC ACATGCCGCG GGCGATCGCC
GAAATGTCCC ACGCCATGCC GGACGTCGAA TTGATTCCGT TCGCGGTGAT CGGCGACAAG
TGGCGCGACG AGCCGTGGTG GACCAGTGGC GGAACGCTGC GGCTCTTGCT ATCGGAATAC
GCCAAATACC TCGCGGTCGA GCTGCGGGTG CGCCTGTCGA AGCTCGGCAT CGAAGTGATG
CCCGAACCGG CCGATCAGGC CGACCCGACC GGCGCCCGCA AGCCGGCGAC CGCTGCCGCC
AACTGA
|
|---|
| Protein sequence | MELSPDRNPI SPSSDRPVRR GGRLRATIVA VLALGFLVGA GGFVVFLSQL RGAEQKPRHN
ADGIVVLTGG SSRVSDAVEL LAAGYGKRLL ISGVHRTNGA RDISRSVPES RDWFSCCVDL
DRSAVDTRSN ASETRRWVQE RGFRSLIVVT SNYHMPRAIA EMSHAMPDVE LIPFAVIGDK
WRDEPWWTSG GTLRLLLSEY AKYLAVELRV RLSKLGIEVM PEPADQADPT GARKPATAAA
N
|
|---|
| |