Gene Rpal_5187 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5187 
Symbol 
ID6412887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp5590014 
End bp5590595 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content63% 
IMG OID642715077 
ProductDedA 
Protein accessionYP_001994150 
Protein GI192293545 
COG category[S] Function unknown 
COG ID[COG1238] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.936462 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCGCA AAATCTACGA CTGGTGCATC GACGCCGCCC ACAAGCCCTA CGCCCTTTGG 
ATTCTGGGGA TGGTCTCCTT CGCGGAGAGC TCATTCTTCC CGATCCCGCC GGACGTGATG 
CTGATTCCGA TGTCACTGGC GCGGCCGCAA CGCGCCTGGT TCTACGCGGC GCTGTGCACC 
GTCACCTCGG TGGCCGGCGG CGTCGTCGGT TACGCGATCG GCGCACTGCT GTACGACTCG 
GTTGGGCACT GGCTGATCCA GCTTTACGGC TATGGCGACA AAGTCGAGGC GTTTCGCGCC 
GGCTACGCCC AATGGGGCGC CTGGATCATC CTGCTCAAGG GCCTCACCCC GATCCCGTAC 
AAGCTCGTCA CCATCACCTC GGGCTTTGCC GGCTACGACA TCTGGCTGTT CATCCTGTTC 
TCGATCATTG CCCGCGGTGG CCGGTTCTTC ATCGTCGCGG TCGTGCTGAA CCGCTATGGC 
GTGGTGATCC GCGAGCAGAT CGAAAAGCGG CTCGGCCTGT GGGTGACGAT CGGCGCGGTG 
GTGCTGGTCC TCGGCTTCGT CATCGCCTTC AAGCTGGTCT AG
 
Protein sequence
MLRKIYDWCI DAAHKPYALW ILGMVSFAES SFFPIPPDVM LIPMSLARPQ RAWFYAALCT 
VTSVAGGVVG YAIGALLYDS VGHWLIQLYG YGDKVEAFRA GYAQWGAWII LLKGLTPIPY 
KLVTITSGFA GYDIWLFILF SIIARGGRFF IVAVVLNRYG VVIREQIEKR LGLWVTIGAV 
VLVLGFVIAF KLV